Variant report

Variant	rs679986
Chromosome Location	chr10:117210843-117210844
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10787573	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11498596	1.00[CHB][hapmap];0.92[CHD][hapmap];0.84[JPT][hapmap];0.83[MEX][hapmap]
rs1494174	0.95[CHB][hapmap];0.80[YRI][hapmap];0.88[ASN][1000 genomes]
rs1565833	0.90[CHB][hapmap];0.83[MEX][hapmap];0.81[YRI][hapmap];0.84[ASN][1000 genomes]
rs2165988	0.95[CHB][hapmap];0.85[CHD][hapmap];0.84[JPT][hapmap];0.83[MEX][hapmap]
rs2201363	0.85[CHB][hapmap];0.84[JPT][hapmap]
rs2485966	0.86[ASN][1000 genomes]
rs2485968	0.84[ASN][1000 genomes]
rs2485971	0.90[CHB][hapmap];0.81[YRI][hapmap];0.84[ASN][1000 genomes]
rs584030	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap]
rs594160	0.90[CHB][hapmap];0.86[ASN][1000 genomes]
rs615905	0.90[CHB][hapmap];0.85[YRI][hapmap];0.84[ASN][1000 genomes]
rs649292	0.85[CHB][hapmap];0.80[MEX][hapmap]
rs650060	0.90[CHB][hapmap]
rs671943	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs683117	0.80[ASN][1000 genomes]
rs9630105	0.81[CHB][hapmap];0.84[JPT][hapmap]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs679986	EIF3A	cis	parietal	SCAN
rs679986	EMX2	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:117207200-117220200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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