Variant report

Variant	rs10787573
Chromosome Location	chr10:117205246-117205247
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11498596	1.00[CHB][hapmap];0.84[JPT][hapmap]
rs1494174	0.95[CHB][hapmap];0.88[ASN][1000 genomes]
rs1565833	0.90[CHB][hapmap];0.84[ASN][1000 genomes]
rs2165988	0.95[CHB][hapmap];0.84[JPT][hapmap]
rs2201363	0.85[CHB][hapmap];0.84[JPT][hapmap]
rs2485966	0.86[ASN][1000 genomes]
rs2485968	0.84[ASN][1000 genomes]
rs2485971	0.90[CHB][hapmap];0.84[ASN][1000 genomes]
rs584030	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs594160	0.91[CHB][hapmap];0.86[ASN][1000 genomes]
rs615905	0.91[CHB][hapmap];0.84[ASN][1000 genomes]
rs649292	0.86[CHB][hapmap]
rs650060	0.91[CHB][hapmap]
rs671943	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs679986	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs683117	0.80[ASN][1000 genomes]
rs9630105	0.82[CHB][hapmap];0.84[JPT][hapmap]

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:117202200-117210800	Weak transcription	Ovary	ovary
2	chr10:117205000-117205400	Enhancers	Fetal Heart	heart
3	chr10:117205200-117205400	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links