Variant report

Variant	rs649292
Chromosome Location	chr10:117182278-117182279
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10787567	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10787573	0.86[CHB][hapmap];0.84[ASN][1000 genomes]
rs11197173	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11498596	0.82[CEU][hapmap];0.86[CHB][hapmap];0.85[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];0.80[MEX][hapmap];0.94[TSI][hapmap];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12253499	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1494174	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1565833	0.95[CEU][hapmap];0.86[CHB][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2165988	0.82[CEU][hapmap];0.91[CHB][hapmap];0.86[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.80[MEX][hapmap];0.94[TSI][hapmap];0.81[ASN][1000 genomes]
rs2201363	0.82[CEU][hapmap];0.95[CHB][hapmap];0.81[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];0.88[LWK][hapmap];0.92[MEX][hapmap];0.97[TSI][hapmap];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2256563	0.82[CEU][hapmap];0.84[JPT][hapmap]
rs2485966	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2485968	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2485971	0.95[CEU][hapmap];0.86[CHB][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs584030	0.90[CHB][hapmap];0.84[MEX][hapmap]
rs594160	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs615905	0.82[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs650060	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap]
rs671943	0.84[ASN][1000 genomes]
rs675816	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs679986	0.85[CHB][hapmap];0.80[MEX][hapmap];0.84[ASN][1000 genomes]
rs683117	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs703352	0.86[ASN][1000 genomes]
rs9630104	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9630105	0.82[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs649292	PRLHR	cis	parietal	SCAN
rs649292	TRUB1	cis	cerebellum	SCAN
rs649292	EIF3A	cis	parietal	SCAN

Chromatin state (count:0 , 50 per page) page:

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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