Variant report

Variant	rs2587461
Chromosome Location	chr10:117018045-117018046
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10787567	0.80[EUR][1000 genomes]
rs11197173	0.83[EUR][1000 genomes]
rs11498596	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12253499	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1264750	0.81[EUR][1000 genomes]
rs1264755	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1264764	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1264798	0.85[EUR][1000 genomes]
rs1269601	0.85[EUR][1000 genomes]
rs1615076	0.90[EUR][1000 genomes]
rs2165988	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2201363	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2256563	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs615905	0.80[EUR][1000 genomes]
rs675816	0.81[EUR][1000 genomes]
rs9630104	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9630105	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869279	chr10:116884639-117032437	Enhancers ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv868940	chr10:116933802-117032437	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116997200-117049800	Weak transcription	Ovary	ovary
2	chr10:117011400-117034400	Weak transcription	Aorta	Aorta
3	chr10:117017600-117018400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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