Variant report

Variant	rs12649738
Chromosome Location	chr4:62840086-62840087
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10517550	0.93[ASN][1000 genomes]
rs1397547	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1450894	0.87[ASN][1000 genomes]
rs17226342	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17292121	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2017522	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28490110	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4860105	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4860446	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7672853	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs970358	0.86[ASN][1000 genomes]
rs989294	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs989295	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs995447	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461377	chr4:62368762-62883431	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv594328	chr4:62368762-62883431	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:62802000-62852000	Weak transcription	Fetal Muscle Trunk	muscle
2	chr4:62804600-62845200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr4:62824600-62877400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr4:62826400-62845200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr4:62836600-62853600	Weak transcription	Brain Substantia Nigra	brain
6	chr4:62836800-62854800	Weak transcription	Fetal Kidney	kidney
7	chr4:62838000-62845200	Weak transcription	Fetal Muscle Leg	muscle
8	chr4:62838000-62851400	Weak transcription	Fetal Stomach	stomach

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links