Variant report

Variant	rs1450894
Chromosome Location	chr4:62786077-62786078
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10517550	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11944676	0.87[EUR][1000 genomes]
rs12649738	0.87[ASN][1000 genomes]
rs1376308	0.95[EUR][1000 genomes]
rs1376311	0.91[CHB][hapmap];0.87[GIH][hapmap];1.00[MEX][hapmap];0.95[EUR][1000 genomes]
rs1397547	0.83[ASN][1000 genomes]
rs17226314	1.00[ASW][hapmap];0.91[CHB][hapmap];0.87[GIH][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17226342	0.87[ASN][1000 genomes]
rs17292121	0.89[ASN][1000 genomes]
rs2017522	0.87[ASN][1000 genomes]
rs28490110	0.88[ASN][1000 genomes]
rs4860105	0.88[ASN][1000 genomes]
rs4860446	0.88[ASN][1000 genomes]
rs7437338	0.82[CHB][hapmap];0.87[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes]
rs7672853	0.87[ASN][1000 genomes]
rs970358	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs989294	0.89[ASN][1000 genomes]
rs989295	0.89[ASN][1000 genomes]
rs995447	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461377	chr4:62368762-62883431	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv594328	chr4:62368762-62883431	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv428760	chr4:62649399-62824542	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:62763600-62800400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr4:62765000-62803400	Weak transcription	Fetal Stomach	stomach
3	chr4:62777400-62786200	Weak transcription	Brain Anterior Caudate	brain
4	chr4:62782200-62788400	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr4:62782400-62789400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr4:62783800-62788800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr4:62784600-62786400	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr4:62784600-62786400	Enhancers	Brain Cingulate Gyrus	brain
9	chr4:62784800-62786800	Weak transcription	Brain Substantia Nigra	brain
10	chr4:62785200-62787600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr4:62785200-62789200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr4:62785400-62788600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr4:62785800-62788400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr4:62785800-62788600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr4:62785800-62799200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr4:62786000-62786400	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr4:62786000-62786400	Weak transcription	Fetal Kidney	kidney

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links