Variant report

Variant	rs970358
Chromosome Location	chr4:62781230-62781231
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10517550	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11944676	0.87[EUR][1000 genomes]
rs12649738	0.86[ASN][1000 genomes]
rs1376308	0.95[EUR][1000 genomes]
rs1376311	0.90[CHB][hapmap];0.95[EUR][1000 genomes]
rs1397547	0.85[ASN][1000 genomes]
rs1450894	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17226314	0.90[CHB][hapmap];0.95[EUR][1000 genomes]
rs17226342	0.86[ASN][1000 genomes]
rs17292121	0.87[ASN][1000 genomes]
rs2017522	0.86[ASN][1000 genomes]
rs28490110	0.87[ASN][1000 genomes]
rs4860105	0.87[ASN][1000 genomes]
rs4860446	0.87[ASN][1000 genomes]
rs7437338	0.95[EUR][1000 genomes]
rs7672853	0.86[ASN][1000 genomes]
rs989294	0.87[ASN][1000 genomes]
rs989295	0.87[ASN][1000 genomes]
rs995447	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461377	chr4:62368762-62883431	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv594328	chr4:62368762-62883431	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv428760	chr4:62649399-62824542	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv999023	chr4:62739674-62784921	Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:62763600-62800400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr4:62765000-62803400	Weak transcription	Fetal Stomach	stomach
3	chr4:62777200-62782400	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr4:62777400-62781800	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr4:62777400-62782200	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr4:62777400-62784400	Weak transcription	Fetal Kidney	kidney
7	chr4:62777400-62786200	Weak transcription	Brain Anterior Caudate	brain
8	chr4:62777800-62781800	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr4:62778800-62781400	Enhancers	H1 Cell Line	embryonic stem cell
10	chr4:62778800-62784200	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr4:62778800-62784200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr4:62780200-62782000	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr4:62780400-62783200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr4:62781000-62781800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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