Variant report
Variant | rs12650088 |
---|---|
Chromosome Location | chr4:166580040-166580041 |
allele | A/C |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10012405 | 0.83[CHB][hapmap];0.86[ASN][1000 genomes] |
rs10029541 | 0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs11931542 | 0.90[ASN][1000 genomes] |
rs11932029 | 0.86[ASN][1000 genomes] |
rs1246904 | 0.86[ASN][1000 genomes] |
rs1246906 | 0.86[ASN][1000 genomes] |
rs1459507 | 0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs17632233 | 0.86[ASN][1000 genomes] |
rs1841210 | 0.86[ASN][1000 genomes] |
rs2253129 | 0.86[ASN][1000 genomes] |
rs2322266 | 0.86[ASN][1000 genomes] |
rs2611205 | 0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs2611209 | 0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs2611211 | 0.96[ASN][1000 genomes] |
rs2611212 | 0.82[ASN][1000 genomes] |
rs2611214 | 0.82[ASN][1000 genomes] |
rs2611215 | 0.90[ASN][1000 genomes] |
rs2611216 | 0.90[ASN][1000 genomes] |
rs2611218 | 0.82[ASN][1000 genomes] |
rs2611219 | 0.87[ASN][1000 genomes] |
rs2611220 | 0.82[ASN][1000 genomes] |
rs2611221 | 0.90[ASN][1000 genomes] |
rs2714828 | 0.90[ASN][1000 genomes] |
rs2714829 | 0.90[ASN][1000 genomes] |
rs2714831 | 0.82[ASN][1000 genomes] |
rs2714833 | 0.90[ASN][1000 genomes] |
rs2714834 | 0.90[ASN][1000 genomes] |
rs2714835 | 0.82[ASN][1000 genomes] |
rs2714836 | 0.82[ASN][1000 genomes] |
rs2714837 | 0.90[ASN][1000 genomes] |
rs2714839 | 0.88[ASN][1000 genomes] |
rs28455937 | 0.85[ASN][1000 genomes] |
rs28504666 | 0.86[ASN][1000 genomes] |
rs28602943 | 0.86[ASN][1000 genomes] |
rs4511957 | 0.86[ASN][1000 genomes] |
rs4691212 | 0.88[CHB][hapmap];0.86[ASN][1000 genomes] |
rs56396842 | 0.82[ASN][1000 genomes] |
rs58230571 | 0.86[ASN][1000 genomes] |
rs60551091 | 0.91[ASN][1000 genomes] |
rs61702512 | 0.89[ASN][1000 genomes] |
rs6536925 | 0.83[ASN][1000 genomes] |
rs6536926 | 0.90[ASN][1000 genomes] |
rs72631701 | 0.90[ASN][1000 genomes] |
rs72631702 | 0.86[ASN][1000 genomes] |
rs72635103 | 0.86[ASN][1000 genomes] |
rs72635104 | 0.86[ASN][1000 genomes] |
rs72635105 | 0.86[ASN][1000 genomes] |
rs72635106 | 0.86[ASN][1000 genomes] |
rs72635107 | 0.86[ASN][1000 genomes] |
rs73863250 | 0.86[ASN][1000 genomes] |
rs73863253 | 0.86[ASN][1000 genomes] |
rs73863254 | 0.86[ASN][1000 genomes] |
rs7437622 | 0.82[ASN][1000 genomes] |
rs764240 | 0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs7675632 | 0.90[ASN][1000 genomes] |
rs7696608 | 0.90[ASN][1000 genomes] |
rs9308114 | 0.86[ASN][1000 genomes] |
rs9992610 | 0.85[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv830141 | chr4:166502908-166689626 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
2 | nsv1028337 | chr4:166544699-166659468 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
3 | nsv537338 | chr4:166544699-166659468 | Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
4 | esv3486584 | chr4:166565013-166680227 | Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
5 | esv3486585 | chr4:166565013-166680227 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr4:166570000-166584200 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
2 | chr4:166578200-166581800 | Weak transcription | H9 Cell Line | embryonic stem cell |
3 | chr4:166578400-166583600 | Weak transcription | Muscle Satellite Cultured Cells | -- |
4 | chr4:166578600-166583600 | Weak transcription | HepG2 | liver |
5 | chr4:166579000-166583800 | Weak transcription | iPS-20b Cell Line | embryonic stem cell |
6 | chr4:166579600-166583800 | Weak transcription | ES-I3 Cell Line | embryonic stem cell |