Variant report

Variant	rs60551091
Chromosome Location	chr4:166579726-166579727
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10012405	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10029541	0.89[ASN][1000 genomes]
rs11931542	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11932029	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11938725	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1246905	0.86[ASN][1000 genomes]
rs1246908	0.85[ASN][1000 genomes]
rs1246910	0.86[ASN][1000 genomes]
rs1246918	0.85[ASN][1000 genomes]
rs1246920	0.86[ASN][1000 genomes]
rs12650088	0.91[ASN][1000 genomes]
rs1312880	0.86[ASN][1000 genomes]
rs1459507	0.84[ASN][1000 genomes]
rs17632084	0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17632233	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1960435	0.86[ASN][1000 genomes]
rs2611205	0.91[ASN][1000 genomes]
rs2611209	0.90[ASN][1000 genomes]
rs2611211	0.88[ASN][1000 genomes]
rs2611212	0.90[ASN][1000 genomes]
rs2611214	0.90[ASN][1000 genomes]
rs2611215	0.82[ASN][1000 genomes]
rs2611216	0.82[ASN][1000 genomes]
rs2611218	0.90[ASN][1000 genomes]
rs2611220	0.90[ASN][1000 genomes]
rs2611221	0.82[ASN][1000 genomes]
rs2714828	0.82[ASN][1000 genomes]
rs2714829	0.82[ASN][1000 genomes]
rs2714831	0.90[ASN][1000 genomes]
rs2714833	0.82[ASN][1000 genomes]
rs2714834	0.82[ASN][1000 genomes]
rs2714835	0.90[ASN][1000 genomes]
rs2714836	0.90[ASN][1000 genomes]
rs2714837	0.82[ASN][1000 genomes]
rs2714839	0.81[ASN][1000 genomes]
rs28455937	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28504666	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28602943	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4691212	0.93[ASN][1000 genomes]
rs55989211	0.87[EUR][1000 genomes]
rs56396842	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58230571	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61702512	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6536926	0.82[ASN][1000 genomes]
rs72631701	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72631702	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72635103	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72635104	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72635105	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72635106	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72635107	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs736675	0.86[ASN][1000 genomes]
rs73863250	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73863253	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73863254	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7437622	0.90[ASN][1000 genomes]
rs764240	0.88[ASN][1000 genomes]
rs7675632	0.82[ASN][1000 genomes]
rs7696608	0.82[ASN][1000 genomes]
rs9308114	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9992610	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830141	chr4:166502908-166689626	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1028337	chr4:166544699-166659468	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv537338	chr4:166544699-166659468	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv3486584	chr4:166565013-166680227	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	esv3486585	chr4:166565013-166680227	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166570000-166584200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:166578200-166581800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr4:166578400-166583600	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr4:166578600-166583600	Weak transcription	HepG2	liver
5	chr4:166579000-166583800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr4:166579600-166583800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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