Variant report

Variant	rs736675
Chromosome Location	chr4:166552698-166552699
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:166551503..166553353-chr4:166596803..166598460,2	MCF-7	breast:

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10012405	1.00[CEU][hapmap];0.81[JPT][hapmap];0.80[ASN][1000 genomes]
rs11931542	0.87[ASN][1000 genomes]
rs11932029	0.80[ASN][1000 genomes]
rs11938725	1.00[ASN][1000 genomes]
rs1246904	0.92[ASN][1000 genomes]
rs1246905	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1246906	0.92[ASN][1000 genomes]
rs1246908	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1246910	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1246918	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1246920	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1312880	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17632084	0.94[ASN][1000 genomes]
rs17632233	0.80[ASN][1000 genomes]
rs1841210	0.92[ASN][1000 genomes]
rs1960435	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2253129	0.92[ASN][1000 genomes]
rs2322266	0.93[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs2611211	0.81[ASN][1000 genomes]
rs2611212	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2611214	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2611215	0.86[ASN][1000 genomes]
rs2611216	0.86[ASN][1000 genomes]
rs2611218	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2611219	0.83[ASN][1000 genomes]
rs2611220	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2611221	0.86[ASN][1000 genomes]
rs2714828	0.83[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs2714829	0.86[ASN][1000 genomes]
rs2714831	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2714833	0.86[ASN][1000 genomes]
rs2714834	0.86[ASN][1000 genomes]
rs2714835	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2714836	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2714837	0.86[ASN][1000 genomes]
rs2714839	0.85[ASN][1000 genomes]
rs28504666	0.80[ASN][1000 genomes]
rs28602943	0.80[ASN][1000 genomes]
rs4511957	0.80[ASN][1000 genomes]
rs4691212	0.89[CHD][hapmap];0.81[JPT][hapmap]
rs55989211	0.88[ASN][1000 genomes]
rs56396842	0.94[ASN][1000 genomes]
rs58230571	0.80[ASN][1000 genomes]
rs60551091	0.86[ASN][1000 genomes]
rs61702512	0.84[ASN][1000 genomes]
rs6536925	0.90[ASN][1000 genomes]
rs6536926	0.86[ASN][1000 genomes]
rs72631701	0.87[ASN][1000 genomes]
rs72631702	0.80[ASN][1000 genomes]
rs72635103	0.80[ASN][1000 genomes]
rs72635104	0.80[ASN][1000 genomes]
rs72635105	0.80[ASN][1000 genomes]
rs72635106	0.80[ASN][1000 genomes]
rs72635107	0.80[ASN][1000 genomes]
rs73863250	0.80[ASN][1000 genomes]
rs73863253	0.80[ASN][1000 genomes]
rs73863254	0.80[ASN][1000 genomes]
rs7437622	0.94[ASN][1000 genomes]
rs764240	0.81[ASN][1000 genomes]
rs7675632	0.86[ASN][1000 genomes]
rs7696608	0.86[ASN][1000 genomes]
rs9308114	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830141	chr4:166502908-166689626	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1028337	chr4:166544699-166659468	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv537338	chr4:166544699-166659468	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166545200-166555200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:166549000-166553200	Weak transcription	Psoas Muscle	Psoas
3	chr4:166551800-166553600	Enhancers	Muscle Satellite Cultured Cells	--
4	chr4:166551800-166553800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr4:166551800-166554000	Enhancers	HMEC	breast
6	chr4:166552000-166553000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr4:166552000-166553400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr4:166552000-166553600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr4:166552000-166553600	Enhancers	Fetal Heart	heart
10	chr4:166552000-166554000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr4:166552200-166552800	Flanking Active TSS	NHEK	skin
12	chr4:166552200-166554000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr4:166552400-166553000	Enhancers	Skeletal Muscle Male	skeletal muscle
14	chr4:166552400-166553400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr4:166552400-166554000	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr4:166552600-166553400	Enhancers	Fetal Thymus	thymus
17	chr4:166552600-166553600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr4:166552600-166554000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links