Variant report

Variant	rs1246908
Chromosome Location	chr4:166557848-166557849
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10012405	1.00[CEU][hapmap];0.81[JPT][hapmap]
rs11931542	0.87[ASN][1000 genomes]
rs11938725	0.99[ASN][1000 genomes]
rs1246904	0.91[ASN][1000 genomes]
rs1246905	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1246906	0.91[ASN][1000 genomes]
rs1246910	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1246918	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1246920	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1312880	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17632084	0.93[ASN][1000 genomes]
rs1841210	0.91[ASN][1000 genomes]
rs1960435	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2253129	0.91[ASN][1000 genomes]
rs2322266	0.93[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs2611211	0.80[ASN][1000 genomes]
rs2611212	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2611214	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2611215	0.85[ASN][1000 genomes]
rs2611216	0.85[ASN][1000 genomes]
rs2611218	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2611219	0.83[ASN][1000 genomes]
rs2611220	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2611221	0.85[ASN][1000 genomes]
rs2714828	0.83[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs2714829	0.85[ASN][1000 genomes]
rs2714831	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2714833	0.85[ASN][1000 genomes]
rs2714834	0.85[ASN][1000 genomes]
rs2714835	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2714836	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2714837	0.85[ASN][1000 genomes]
rs2714839	0.84[ASN][1000 genomes]
rs55989211	0.87[ASN][1000 genomes]
rs56396842	0.93[ASN][1000 genomes]
rs60551091	0.85[ASN][1000 genomes]
rs61702512	0.83[ASN][1000 genomes]
rs6536925	0.89[ASN][1000 genomes]
rs6536926	0.85[ASN][1000 genomes]
rs72631701	0.87[ASN][1000 genomes]
rs736675	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7437622	0.93[ASN][1000 genomes]
rs764240	0.80[ASN][1000 genomes]
rs7675632	0.85[ASN][1000 genomes]
rs7696608	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830141	chr4:166502908-166689626	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1028337	chr4:166544699-166659468	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv537338	chr4:166544699-166659468	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166556600-166569200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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