Variant report

Variant	rs17632084
Chromosome Location	chr4:166545542-166545543
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10012405	0.92[EUR][1000 genomes]
rs11931542	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11932029	0.92[EUR][1000 genomes]
rs11938725	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1246904	0.86[ASN][1000 genomes]
rs1246905	0.94[ASN][1000 genomes]
rs1246906	0.86[ASN][1000 genomes]
rs1246908	0.93[ASN][1000 genomes]
rs1246910	0.94[ASN][1000 genomes]
rs1246918	0.90[ASN][1000 genomes]
rs1246920	0.94[ASN][1000 genomes]
rs1312880	0.94[ASN][1000 genomes]
rs17632233	0.92[EUR][1000 genomes]
rs1841210	0.86[ASN][1000 genomes]
rs1960435	0.94[ASN][1000 genomes]
rs2253129	0.86[ASN][1000 genomes]
rs2322266	0.86[ASN][1000 genomes]
rs2611212	0.88[ASN][1000 genomes]
rs2611214	0.88[ASN][1000 genomes]
rs2611215	0.80[ASN][1000 genomes]
rs2611216	0.80[ASN][1000 genomes]
rs2611218	0.88[ASN][1000 genomes]
rs2611220	0.88[ASN][1000 genomes]
rs2611221	0.80[ASN][1000 genomes]
rs2714828	0.80[ASN][1000 genomes]
rs2714829	0.80[ASN][1000 genomes]
rs2714831	0.88[ASN][1000 genomes]
rs2714833	0.80[ASN][1000 genomes]
rs2714834	0.80[ASN][1000 genomes]
rs2714835	0.88[ASN][1000 genomes]
rs2714836	0.88[ASN][1000 genomes]
rs2714837	0.80[ASN][1000 genomes]
rs28455937	0.92[EUR][1000 genomes]
rs28504666	0.92[EUR][1000 genomes]
rs28602943	0.92[EUR][1000 genomes]
rs55989211	0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs56396842	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs58230571	0.92[EUR][1000 genomes]
rs60551091	0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs61702512	0.92[EUR][1000 genomes]
rs6536925	0.84[ASN][1000 genomes]
rs6536926	0.80[ASN][1000 genomes]
rs72631701	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72631702	0.92[EUR][1000 genomes]
rs72635103	0.92[EUR][1000 genomes]
rs72635104	0.92[EUR][1000 genomes]
rs72635105	0.92[EUR][1000 genomes]
rs72635106	0.92[EUR][1000 genomes]
rs72635107	0.92[EUR][1000 genomes]
rs736675	0.94[ASN][1000 genomes]
rs73863250	0.92[EUR][1000 genomes]
rs73863253	0.92[EUR][1000 genomes]
rs73863254	0.92[EUR][1000 genomes]
rs7437622	0.88[ASN][1000 genomes]
rs7675632	0.80[ASN][1000 genomes]
rs7696608	0.80[ASN][1000 genomes]
rs9308114	0.92[EUR][1000 genomes]
rs9992610	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830141	chr4:166502908-166689626	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1028337	chr4:166544699-166659468	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv537338	chr4:166544699-166659468	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166542400-166548000	Enhancers	HUVEC	blood vessel
2	chr4:166543400-166545600	Weak transcription	HMEC	breast
3	chr4:166543600-166545800	Weak transcription	NHEK	skin
4	chr4:166544600-166546600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr4:166544800-166546000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr4:166544800-166547400	Enhancers	Muscle Satellite Cultured Cells	--
7	chr4:166545200-166555200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr4:166545400-166545600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr4:166545400-166546400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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