Variant report

Variant	rs1246920
Chromosome Location	chr4:166550174-166550175
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10012405	1.00[CEU][hapmap];0.82[JPT][hapmap];0.80[ASN][1000 genomes]
rs11931542	0.87[ASN][1000 genomes]
rs11932029	0.80[ASN][1000 genomes]
rs11938725	1.00[ASN][1000 genomes]
rs1246904	0.92[ASN][1000 genomes]
rs1246905	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1246906	0.92[ASN][1000 genomes]
rs1246908	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1246910	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1246918	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1312880	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17632084	0.94[ASN][1000 genomes]
rs17632233	0.80[ASN][1000 genomes]
rs1841210	0.92[ASN][1000 genomes]
rs1960435	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2253129	0.92[ASN][1000 genomes]
rs2322266	0.91[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs2611211	0.81[ASN][1000 genomes]
rs2611212	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2611214	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2611215	0.86[ASN][1000 genomes]
rs2611216	0.86[ASN][1000 genomes]
rs2611218	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2611219	0.83[ASN][1000 genomes]
rs2611220	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2611221	0.86[ASN][1000 genomes]
rs2714828	0.81[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs2714829	0.86[ASN][1000 genomes]
rs2714831	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2714833	0.86[ASN][1000 genomes]
rs2714834	0.86[ASN][1000 genomes]
rs2714835	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2714836	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2714837	0.86[ASN][1000 genomes]
rs2714839	0.85[ASN][1000 genomes]
rs28504666	0.80[ASN][1000 genomes]
rs28602943	0.80[ASN][1000 genomes]
rs4511957	0.80[ASN][1000 genomes]
rs4691212	0.81[JPT][hapmap]
rs55989211	0.88[ASN][1000 genomes]
rs56396842	0.94[ASN][1000 genomes]
rs58230571	0.80[ASN][1000 genomes]
rs60551091	0.86[ASN][1000 genomes]
rs61702512	0.84[ASN][1000 genomes]
rs6536925	0.90[ASN][1000 genomes]
rs6536926	0.86[ASN][1000 genomes]
rs72631701	0.87[ASN][1000 genomes]
rs72631702	0.80[ASN][1000 genomes]
rs72635103	0.80[ASN][1000 genomes]
rs72635104	0.80[ASN][1000 genomes]
rs72635105	0.80[ASN][1000 genomes]
rs72635106	0.80[ASN][1000 genomes]
rs72635107	0.80[ASN][1000 genomes]
rs736675	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73863250	0.80[ASN][1000 genomes]
rs73863253	0.80[ASN][1000 genomes]
rs73863254	0.80[ASN][1000 genomes]
rs7437622	0.94[ASN][1000 genomes]
rs764240	0.81[ASN][1000 genomes]
rs7675632	0.86[ASN][1000 genomes]
rs7696608	0.86[ASN][1000 genomes]
rs9308114	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830141	chr4:166502908-166689626	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1028337	chr4:166544699-166659468	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv537338	chr4:166544699-166659468	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv3357298	chr4:166550051-166550260	Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166545200-166555200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:166545800-166551800	Weak transcription	HMEC	breast
3	chr4:166546200-166552000	Weak transcription	NHEK	skin
4	chr4:166546400-166552000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr4:166546600-166551800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr4:166546800-166552000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr4:166547400-166551800	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr4:166547600-166552000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr4:166549000-166553200	Weak transcription	Psoas Muscle	Psoas

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