Variant report

Variant	rs28455937
Chromosome Location	chr4:166591172-166591173
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:166552860..166555630-chr4:166591074..166593334,2	MCF-7	breast:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10012405	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10029541	0.87[ASN][1000 genomes]
rs11931542	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11932029	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11938725	0.92[EUR][1000 genomes]
rs12650088	0.85[ASN][1000 genomes]
rs1459507	0.89[ASN][1000 genomes]
rs17632084	0.92[EUR][1000 genomes]
rs17632233	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2611205	0.85[ASN][1000 genomes]
rs2611209	0.83[ASN][1000 genomes]
rs2611211	0.82[ASN][1000 genomes]
rs2611212	0.84[ASN][1000 genomes]
rs2611214	0.84[ASN][1000 genomes]
rs2611218	0.84[ASN][1000 genomes]
rs2611220	0.84[ASN][1000 genomes]
rs2714831	0.84[ASN][1000 genomes]
rs2714835	0.84[ASN][1000 genomes]
rs2714836	0.84[ASN][1000 genomes]
rs28504666	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28602943	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4691212	0.98[ASN][1000 genomes]
rs55989211	0.87[EUR][1000 genomes]
rs56396842	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs58230571	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs60551091	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61702512	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72631701	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72631702	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72635103	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72635104	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72635105	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72635106	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72635107	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73863250	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73863253	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73863254	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7437622	0.84[ASN][1000 genomes]
rs764240	0.82[ASN][1000 genomes]
rs9308114	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9992610	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830141	chr4:166502908-166689626	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1028337	chr4:166544699-166659468	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv537338	chr4:166544699-166659468	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv3486584	chr4:166565013-166680227	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	esv3486585	chr4:166565013-166680227	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166590000-166591200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr4:166590600-166592200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links