Variant report

Variant	rs12651194
Chromosome Location	chr4:118404243-118404244
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11725039	0.81[ASN][1000 genomes]
rs12510650	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1352574	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1489545	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1489555	0.88[ASN][1000 genomes]
rs17861990	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1948246	0.88[ASN][1000 genomes]
rs2010003	0.90[ASN][1000 genomes]
rs2635241	0.88[ASN][1000 genomes]
rs2635333	0.88[ASN][1000 genomes]
rs2635335	0.88[ASN][1000 genomes]
rs2635337	0.88[ASN][1000 genomes]
rs2635341	0.88[ASN][1000 genomes]
rs2932188	0.88[ASN][1000 genomes]
rs2969620	0.88[ASN][1000 genomes]
rs6534039	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6534040	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427692	chr4:118262899-118437573	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv482430	chr4:118347180-118497181	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:118404000-118404600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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