Variant report

Variant	rs6534039
Chromosome Location	chr4:118403014-118403015
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11725039	0.80[ASN][1000 genomes]
rs12510650	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12651194	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1352574	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1489545	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1489555	0.87[ASN][1000 genomes]
rs17861990	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1948246	0.87[ASN][1000 genomes]
rs2010003	0.89[ASN][1000 genomes]
rs2635241	0.87[ASN][1000 genomes]
rs2635333	0.87[ASN][1000 genomes]
rs2635335	0.87[ASN][1000 genomes]
rs2635337	0.87[ASN][1000 genomes]
rs2635341	0.87[ASN][1000 genomes]
rs2932188	0.87[ASN][1000 genomes]
rs2969620	0.87[ASN][1000 genomes]
rs6534040	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427692	chr4:118262899-118437573	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv482430	chr4:118347180-118497181	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6534039	METTL14	cis	cerebellum	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:118402200-118403800	Enhancers	NHEK	skin
2	chr4:118402400-118403600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr4:118402400-118403800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr4:118402800-118403600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr4:118402800-118403800	Enhancers	HMEC	breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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