Variant report

Variant	rs2010003
Chromosome Location	chr4:118449462-118449463
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs12651194	0.90[ASN][1000 genomes]
rs1352574	0.98[ASN][1000 genomes]
rs1352575	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1489545	0.98[ASN][1000 genomes]
rs1489546	0.85[EUR][1000 genomes]
rs1489555	0.98[ASN][1000 genomes]
rs1489556	0.83[EUR][1000 genomes]
rs17861990	0.90[ASN][1000 genomes]
rs1906861	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1948245	0.84[EUR][1000 genomes]
rs1948246	0.98[ASN][1000 genomes]
rs1948248	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1948253	0.81[EUR][1000 genomes]
rs2046782	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2200829	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2635221	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2635241	0.98[ASN][1000 genomes]
rs2635242	0.81[ASN][1000 genomes]
rs2635243	0.84[EUR][1000 genomes]
rs2635298	0.85[EUR][1000 genomes]
rs2635332	0.84[EUR][1000 genomes]
rs2635333	0.98[ASN][1000 genomes]
rs2635335	0.98[ASN][1000 genomes]
rs2635337	0.98[ASN][1000 genomes]
rs2635341	0.98[ASN][1000 genomes]
rs2932188	0.98[ASN][1000 genomes]
rs2932189	0.81[EUR][1000 genomes]
rs2969620	0.98[ASN][1000 genomes]
rs6534039	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482430	chr4:118347180-118497181	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv879827	chr4:118406599-118496672	Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv879828	chr4:118408638-118491496	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv879829	chr4:118429875-118479521	Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv879830	chr4:118436983-118479521	Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:118449400-118449800	Enhancers	Fetal Brain Male	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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