Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:35539988..35542729-chr5:35548091..35550770,2	K562	blood:
2	chr5:35547826..35549736-chr5:35553724..35555878,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10941251	0.82[CHB][hapmap]
rs11951251	0.85[AMR][1000 genomes]
rs11960006	0.82[CHB][hapmap];0.85[AMR][1000 genomes]
rs12514518	0.82[CHB][hapmap];0.82[MEX][hapmap]
rs12654422	0.85[AMR][1000 genomes]
rs12656037	0.85[AMR][1000 genomes]
rs12657378	0.85[AMR][1000 genomes]
rs12657936	0.82[CHB][hapmap];0.82[MEX][hapmap];0.85[AMR][1000 genomes]
rs12658117	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12659209	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1396387	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1508650	0.82[MEX][hapmap];0.83[AMR][1000 genomes]
rs1508651	0.83[AMR][1000 genomes]
rs1508652	0.82[MEX][hapmap];0.82[AMR][1000 genomes]
rs1508653	0.82[MEX][hapmap];0.82[AMR][1000 genomes]
rs284766	0.88[GIH][hapmap]
rs34392436	0.86[AMR][1000 genomes]
rs4501318	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4623125	0.87[AMR][1000 genomes]
rs4703419	0.85[AMR][1000 genomes]
rs60285353	0.85[AMR][1000 genomes]
rs62352974	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62352975	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62353010	0.85[AMR][1000 genomes]
rs67609517	0.95[ASN][1000 genomes]
rs7720593	0.85[AMR][1000 genomes]
rs868011	0.88[ASN][1000 genomes]
rs882858	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027038	chr5:35503887-35556247	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv597812	chr5:35505682-35577257	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv525477	chr5:35530905-35792990	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35541600-35553400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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