Variant report
| Variant | rs12659209 |
|---|---|
| Chromosome Location | chr5:35551484-35551485 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs10941251 | 0.82[CHB][hapmap] |
| rs11951251 | 0.85[AMR][1000 genomes] |
| rs11960006 | 0.82[CHB][hapmap];0.85[AMR][1000 genomes] |
| rs12514518 | 0.82[CHB][hapmap];0.82[MEX][hapmap] |
| rs12653412 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12654422 | 0.85[AMR][1000 genomes] |
| rs12656037 | 0.85[AMR][1000 genomes] |
| rs12657378 | 0.85[AMR][1000 genomes] |
| rs12657936 | 0.82[CHB][hapmap];0.82[MEX][hapmap];0.85[AMR][1000 genomes] |
| rs12658117 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1396387 | 0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs1508650 | 0.83[AMR][1000 genomes] |
| rs1508651 | 0.83[AMR][1000 genomes] |
| rs1508652 | 0.82[MEX][hapmap];0.82[AMR][1000 genomes] |
| rs1508653 | 0.82[MEX][hapmap];0.82[AMR][1000 genomes] |
| rs284766 | 0.88[GIH][hapmap] |
| rs34392436 | 0.86[AMR][1000 genomes] |
| rs4501318 | 0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs4623125 | 0.87[AMR][1000 genomes] |
| rs4703419 | 0.85[AMR][1000 genomes] |
| rs60285353 | 0.85[AMR][1000 genomes] |
| rs62352974 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62352975 | 0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs62353010 | 0.85[AMR][1000 genomes] |
| rs67609517 | 0.95[ASN][1000 genomes] |
| rs7720593 | 0.85[AMR][1000 genomes] |
| rs868011 | 0.88[ASN][1000 genomes] |
| rs882858 | 0.89[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1027038 | chr5:35503887-35556247 | Enhancers Weak transcription Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 2 | nsv597812 | chr5:35505682-35577257 | ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | nsv525477 | chr5:35530905-35792990 | Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:35541600-35553400 | Weak transcription | H1 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
