Variant report

Variant	rs34392436
Chromosome Location	chr7:83692396-83692397
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12653412	0.86[AMR][1000 genomes]
rs12658117	0.86[AMR][1000 genomes]
rs12659209	0.86[AMR][1000 genomes]
rs1396387	0.80[AMR][1000 genomes]
rs4501318	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4623125	0.82[AMR][1000 genomes]
rs62352974	0.86[AMR][1000 genomes]
rs62352975	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888624	chr7:83596683-83698177	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv888626	chr7:83651854-83698177	Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv888627	chr7:83659577-83708238	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv888628	chr7:83659577-83722691	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:83673800-83707600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr7:83689600-83697800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr7:83689800-83714400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr7:83690600-83714600	Weak transcription	NHDF-Ad	bronchial
5	chr7:83690800-83702800	Weak transcription	NHLF	lung
6	chr7:83691400-83703000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr7:83692000-83697800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr7:83692000-83697800	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr7:83692000-83702600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr7:83692200-83697800	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr7:83692200-83698000	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr7:83692200-83714600	Weak transcription	H9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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