Variant report

Variant	rs12656097
Chromosome Location	chr5:146869783-146869784
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:146864988..146868068-chr5:146868350..146871206,3	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs17106791	0.91[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3813670	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4705039	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs56210212	0.87[ASN][1000 genomes]
rs60218085	0.87[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs73794778	0.87[ASN][1000 genomes]
rs930213	0.90[CHB][hapmap];0.86[JPT][hapmap];1.00[AMR][1000 genomes]

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:146851800-146883000	Weak transcription	Psoas Muscle	Psoas
2	chr5:146864600-146870200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr5:146864600-146883000	Weak transcription	Stomach Smooth Muscle	stomach
4	chr5:146864800-146870400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr5:146865200-146882600	Weak transcription	Fetal Stomach	stomach
6	chr5:146865400-146870600	Weak transcription	Osteobl	bone
7	chr5:146865600-146870000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr5:146866600-146870200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr5:146866600-146870200	Weak transcription	Adipose Nuclei	Adipose
10	chr5:146866800-146870000	Weak transcription	Colon Smooth Muscle	Colon
11	chr5:146866800-146882600	Weak transcription	NHLF	lung
12	chr5:146866800-146883000	Weak transcription	Ovary	ovary
13	chr5:146867000-146870200	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr5:146867000-146870200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr5:146867000-146870600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr5:146867600-146869800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr5:146867600-146870000	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr5:146867800-146870200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr5:146867800-146870400	Weak transcription	Rectal Smooth Muscle	rectum
20	chr5:146868000-146869800	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr5:146868000-146869800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr5:146868000-146870000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr5:146868000-146870000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr5:146868000-146870200	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr5:146868000-146870200	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr5:146868200-146870200	Weak transcription	HUVEC	blood vessel
27	chr5:146868400-146870600	Weak transcription	Spleen	Spleen
28	chr5:146868800-146870400	Weak transcription	Fetal Muscle Leg	muscle
29	chr5:146869600-146870400	Enhancers	Duodenum Smooth Muscle	Duodenum
30	chr5:146869600-146870800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links