Variant report

Variant	rs3813670
Chromosome Location	chr5:146864746-146864747
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12656097	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17106791	0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4705039	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs56210212	0.87[ASN][1000 genomes]
rs60218085	0.87[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs73794778	0.87[ASN][1000 genomes]
rs930213	0.83[CHB][hapmap];0.88[JPT][hapmap];1.00[AMR][1000 genomes]

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:146851800-146883000	Weak transcription	Psoas Muscle	Psoas
2	chr5:146858400-146865000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr5:146858400-146865200	Weak transcription	Right Atrium	heart
4	chr5:146858800-146865000	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr5:146860200-146865400	Enhancers	NH-A	brain
6	chr5:146860200-146866400	Enhancers	HUVEC	blood vessel
7	chr5:146860200-146867800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr5:146860800-146865400	Enhancers	Primary hematopoietic stem cells	blood
9	chr5:146861000-146865000	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr5:146861000-146865000	Enhancers	Rectal Smooth Muscle	rectum
11	chr5:146861000-146865400	Enhancers	Fetal Muscle Leg	muscle
12	chr5:146861200-146864800	Enhancers	Colon Smooth Muscle	Colon
13	chr5:146861200-146864800	Enhancers	NHLF	lung
14	chr5:146861200-146866600	Enhancers	Adipose Nuclei	Adipose
15	chr5:146861200-146866800	Enhancers	Ovary	ovary
16	chr5:146861400-146865000	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr5:146861400-146865000	Enhancers	iPS-20b Cell Line	embryonic stem cell
18	chr5:146861600-146867800	Weak transcription	Spleen	Spleen
19	chr5:146862000-146865000	Enhancers	H1 Cell Line	embryonic stem cell
20	chr5:146862400-146865000	Enhancers	HUES48 Cell Line	embryonic stem cell
21	chr5:146862600-146864800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
22	chr5:146862600-146864800	Enhancers	HUES6 Cell Line	embryonic stem cell
23	chr5:146863000-146865000	Enhancers	Pancreatic Islets	Pancreatic Islet
24	chr5:146863200-146865200	Enhancers	Fetal Stomach	stomach
25	chr5:146863400-146864800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr5:146863400-146864800	Enhancers	Fetal Brain Male	brain
27	chr5:146863400-146864800	Enhancers	HSMMtube	muscle
28	chr5:146863400-146865200	Enhancers	Aorta	Aorta
29	chr5:146863600-146864800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr5:146863600-146865000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr5:146863800-146865400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr5:146864000-146866200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr5:146864000-146866200	Weak transcription	H9 Cell Line	embryonic stem cell
34	chr5:146864000-146866200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr5:146864000-146866800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr5:146864200-146864800	Flanking Active TSS	NHDF-Ad	bronchial
37	chr5:146864200-146866200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
38	chr5:146864400-146866000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
39	chr5:146864400-146866400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr5:146864400-146866600	Weak transcription	Stomach Mucosa	stomach
41	chr5:146864600-146864800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr5:146864600-146864800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr5:146864600-146865000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr5:146864600-146865200	Enhancers	HSMM	muscle
45	chr5:146864600-146865400	Enhancers	Osteobl	bone
46	chr5:146864600-146866200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
47	chr5:146864600-146867000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr5:146864600-146869600	Weak transcription	Duodenum Smooth Muscle	Duodenum
49	chr5:146864600-146870200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr5:146864600-146883000	Weak transcription	Stomach Smooth Muscle	stomach

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