Variant report

Variant	rs12657877
Chromosome Location	chr5:107282893-107282894
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10037490	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12651919	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12655573	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12656140	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17437658	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17437979	0.86[ASN][1000 genomes]
rs17438307	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17439150	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2067765	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28670811	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4582260	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs55780614	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs55958078	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs58342334	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs59711822	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73204759	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73204760	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73204762	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73204763	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73204764	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73204766	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73204790	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73204796	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73206507	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882682	chr5:107213361-107458336	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv3392473	chr5:107281203-107283101	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107261400-107286600	Weak transcription	Aorta	Aorta
2	chr5:107265800-107284200	Weak transcription	Primary T cells from cord blood	blood
3	chr5:107273400-107284200	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr5:107273600-107287800	Weak transcription	Gastric	stomach
5	chr5:107273800-107286600	Weak transcription	Right Atrium	heart
6	chr5:107274000-107286600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr5:107274400-107284000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr5:107274600-107290000	Weak transcription	Fetal Brain Female	brain
9	chr5:107275200-107286600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr5:107275200-107286600	Weak transcription	Lung	lung
11	chr5:107277800-107285200	Weak transcription	Thymus	Thymus
12	chr5:107278000-107287200	Weak transcription	Pancreas	Pancrea
13	chr5:107278800-107285200	Weak transcription	Fetal Thymus	thymus
14	chr5:107279200-107284200	Weak transcription	Dnd41	blood
15	chr5:107279800-107284000	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr5:107282800-107283200	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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