Variant report

Variant	rs58342334
Chromosome Location	chr5:107326993-107326994
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10037490	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10056741	0.87[EUR][1000 genomes]
rs10077316	0.87[EUR][1000 genomes]
rs10515384	0.88[EUR][1000 genomes]
rs12651724	0.88[EUR][1000 genomes]
rs12651919	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12655573	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12655932	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12656140	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12657877	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12659666	0.81[EUR][1000 genomes]
rs13357987	0.88[EUR][1000 genomes]
rs17381296	0.88[EUR][1000 genomes]
rs17382278	0.82[EUR][1000 genomes]
rs17383035	0.81[EUR][1000 genomes]
rs17437658	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17437979	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17438307	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17439150	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17439877	0.90[EUR][1000 genomes]
rs17440508	0.88[EUR][1000 genomes]
rs17440818	0.88[EUR][1000 genomes]
rs17440916	0.88[EUR][1000 genomes]
rs17441920	0.81[EUR][1000 genomes]
rs17442211	0.81[EUR][1000 genomes]
rs2042187	0.88[EUR][1000 genomes]
rs2067765	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28670811	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4144476	0.88[EUR][1000 genomes]
rs4144478	0.88[EUR][1000 genomes]
rs4582260	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55780614	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55958078	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56108486	0.88[EUR][1000 genomes]
rs58805667	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs59356989	0.81[EUR][1000 genomes]
rs59606487	0.82[EUR][1000 genomes]
rs59711822	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59830006	0.81[EUR][1000 genomes]
rs60447697	0.88[EUR][1000 genomes]
rs6596766	0.88[EUR][1000 genomes]
rs6865057	0.82[EUR][1000 genomes]
rs6872913	0.88[EUR][1000 genomes]
rs723397	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73204759	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73204760	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73204762	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73204763	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73204764	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73204766	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73204790	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73204796	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73206507	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73206538	0.91[EUR][1000 genomes]
rs7704251	0.91[EUR][1000 genomes]
rs7731562	0.88[EUR][1000 genomes]
rs7735773	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882682	chr5:107213361-107458336	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107302400-107334600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr5:107316000-107327000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr5:107319800-107354000	Weak transcription	Primary B cells from cord blood	blood
4	chr5:107321200-107338800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr5:107325800-107327400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
6	chr5:107326600-107327200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
7	chr5:107326600-107327400	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr5:107326600-107327400	Enhancers	Primary T cells fromperipheralblood	blood
9	chr5:107326800-107327200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr5:107326800-107327400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr5:107326800-107327400	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr5:107326800-107327400	Enhancers	GM12878-XiMat	blood
13	chr5:107326800-107327600	Enhancers	Fetal Heart	heart

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