Variant report

Variant	rs73206538
Chromosome Location	chr5:107353600-107353601
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs10037490	0.90[EUR][1000 genomes]
rs10056741	0.83[EUR][1000 genomes]
rs10077316	0.83[EUR][1000 genomes]
rs10440792	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10515384	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12651724	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12651919	0.85[EUR][1000 genomes]
rs12652643	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12652687	0.85[EUR][1000 genomes]
rs12652883	0.85[EUR][1000 genomes]
rs12654751	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12655475	0.85[EUR][1000 genomes]
rs12655573	0.90[EUR][1000 genomes]
rs12655932	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12656140	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12659666	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13357987	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17381296	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17382278	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17383035	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17437658	0.86[EUR][1000 genomes]
rs17438307	0.90[EUR][1000 genomes]
rs17439150	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17439877	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17440508	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17440818	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17440916	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17441920	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17442211	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17442864	0.85[EUR][1000 genomes]
rs17443045	0.81[EUR][1000 genomes]
rs17449654	0.81[EUR][1000 genomes]
rs17449723	0.81[EUR][1000 genomes]
rs2042187	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28670811	0.86[EUR][1000 genomes]
rs4144476	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4144478	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4404664	0.85[EUR][1000 genomes]
rs4582260	0.86[EUR][1000 genomes]
rs55780614	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs55862455	0.85[EUR][1000 genomes]
rs55958078	0.84[EUR][1000 genomes]
rs56108486	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56287990	0.81[EUR][1000 genomes]
rs58342334	0.91[EUR][1000 genomes]
rs58805667	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs59356989	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs59606487	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs59711822	0.91[EUR][1000 genomes]
rs59830006	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60447697	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6596766	0.84[EUR][1000 genomes]
rs6864731	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6865057	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6872068	0.85[EUR][1000 genomes]
rs6872913	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6884026	0.85[EUR][1000 genomes]
rs6889772	0.85[EUR][1000 genomes]
rs6890052	0.84[EUR][1000 genomes]
rs723397	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73204759	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73204760	0.86[EUR][1000 genomes]
rs73204762	0.87[EUR][1000 genomes]
rs73204763	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73204764	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73204766	0.90[EUR][1000 genomes]
rs73204790	0.91[EUR][1000 genomes]
rs73204796	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73206507	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7704251	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7731562	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7735773	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882682	chr5:107213361-107458336	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107319800-107354000	Weak transcription	Primary B cells from cord blood	blood
2	chr5:107339200-107357400	Weak transcription	Primary T helper cells fromperipheralblood	blood
3	chr5:107339200-107361200	Weak transcription	Fetal Heart	heart
4	chr5:107339200-107364200	Weak transcription	Left Ventricle	heart
5	chr5:107339600-107364200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr5:107339600-107373800	Weak transcription	Primary T cells from cord blood	blood
7	chr5:107342600-107355600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr5:107344000-107364200	Weak transcription	Psoas Muscle	Psoas
9	chr5:107344400-107363800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr5:107347800-107353800	Weak transcription	Spleen	Spleen
11	chr5:107350800-107356200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr5:107351400-107355600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr5:107351600-107354000	Weak transcription	Placenta	Placenta
14	chr5:107352400-107354600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr5:107352400-107354800	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr5:107352800-107358200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr5:107352800-107364200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr5:107353200-107354600	Weak transcription	Dnd41	blood
19	chr5:107353200-107357200	Weak transcription	Primary hematopoietic stem cells	blood
20	chr5:107353400-107357600	Weak transcription	Pancreatic Islets	Pancreatic Islet

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