Variant report

Variant	rs17439877
Chromosome Location	chr5:107348433-107348434
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10037490	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10056741	0.83[EUR][1000 genomes]
rs10077316	0.83[EUR][1000 genomes]
rs10440792	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10515384	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12651724	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12651919	0.84[EUR][1000 genomes]
rs12652643	0.84[EUR][1000 genomes]
rs12652687	0.82[EUR][1000 genomes]
rs12652883	0.82[EUR][1000 genomes]
rs12654751	0.84[EUR][1000 genomes]
rs12655475	0.82[EUR][1000 genomes]
rs12655573	0.89[EUR][1000 genomes]
rs12655932	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12656140	0.89[EUR][1000 genomes]
rs12659666	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13357987	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17381296	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17382278	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17383035	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17437658	0.85[EUR][1000 genomes]
rs17438307	0.89[EUR][1000 genomes]
rs17439150	0.93[EUR][1000 genomes]
rs17440508	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17440818	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17440916	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17441920	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17442211	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17442864	0.82[EUR][1000 genomes]
rs2042187	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28670811	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4144476	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4144478	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4404664	0.82[EUR][1000 genomes]
rs4582260	0.85[EUR][1000 genomes]
rs55780614	0.90[EUR][1000 genomes]
rs55862455	0.82[EUR][1000 genomes]
rs55958078	0.84[EUR][1000 genomes]
rs56108486	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs58342334	0.90[EUR][1000 genomes]
rs58805667	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59356989	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs59606487	0.87[EUR][1000 genomes]
rs59711822	0.90[EUR][1000 genomes]
rs59830006	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs60447697	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6596766	0.84[EUR][1000 genomes]
rs6864731	0.84[EUR][1000 genomes]
rs6865057	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6872068	0.82[EUR][1000 genomes]
rs6872913	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6884026	0.82[EUR][1000 genomes]
rs6889772	0.82[EUR][1000 genomes]
rs6890052	0.81[EUR][1000 genomes]
rs723397	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73204759	0.85[EUR][1000 genomes]
rs73204760	0.85[EUR][1000 genomes]
rs73204762	0.86[EUR][1000 genomes]
rs73204763	0.89[EUR][1000 genomes]
rs73204764	0.89[EUR][1000 genomes]
rs73204766	0.89[EUR][1000 genomes]
rs73204790	0.90[EUR][1000 genomes]
rs73204796	0.93[EUR][1000 genomes]
rs73206507	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73206538	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7704251	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7731562	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7735773	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882682	chr5:107213361-107458336	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107319800-107354000	Weak transcription	Primary B cells from cord blood	blood
2	chr5:107327400-107353400	Weak transcription	Aorta	Aorta
3	chr5:107339200-107352400	Weak transcription	Adipose Nuclei	Adipose
4	chr5:107339200-107357400	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr5:107339200-107361200	Weak transcription	Fetal Heart	heart
6	chr5:107339200-107364200	Weak transcription	Left Ventricle	heart
7	chr5:107339600-107350800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr5:107339600-107364200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr5:107339600-107373800	Weak transcription	Primary T cells from cord blood	blood
10	chr5:107342600-107355600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr5:107344000-107364200	Weak transcription	Psoas Muscle	Psoas
12	chr5:107344400-107363800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr5:107347800-107353800	Weak transcription	Spleen	Spleen
14	chr5:107348200-107350200	Weak transcription	iPS-15b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links