Variant report

Variant	rs55958078
Chromosome Location	chr5:107314005-107314006
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10037490	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10056741	0.81[EUR][1000 genomes]
rs10077316	0.81[EUR][1000 genomes]
rs10515384	0.82[EUR][1000 genomes]
rs12651724	0.82[EUR][1000 genomes]
rs12651919	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12655573	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12655932	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12656140	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12657877	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs13357987	0.82[EUR][1000 genomes]
rs17381296	0.82[EUR][1000 genomes]
rs17437658	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17437979	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17438307	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17439150	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17439877	0.84[EUR][1000 genomes]
rs17440508	0.82[EUR][1000 genomes]
rs17440818	0.82[EUR][1000 genomes]
rs17440916	0.82[EUR][1000 genomes]
rs2042187	0.82[EUR][1000 genomes]
rs2067765	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28670811	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4144476	0.82[EUR][1000 genomes]
rs4144478	0.82[EUR][1000 genomes]
rs4582260	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55780614	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56108486	0.82[EUR][1000 genomes]
rs58342334	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58805667	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs59711822	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60447697	0.82[EUR][1000 genomes]
rs6596766	0.82[EUR][1000 genomes]
rs6872913	0.82[EUR][1000 genomes]
rs723397	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73204759	0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73204760	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73204762	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73204763	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73204764	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73204766	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73204790	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73204796	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73206507	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73206538	0.84[EUR][1000 genomes]
rs7704251	0.84[EUR][1000 genomes]
rs7731562	0.82[EUR][1000 genomes]
rs7735773	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882682	chr5:107213361-107458336	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107296200-107321000	Weak transcription	Primary T cells from cord blood	blood
2	chr5:107302400-107334600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr5:107304200-107314200	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr5:107308400-107315400	Weak transcription	Fetal Lung	lung
5	chr5:107309000-107318800	Weak transcription	Left Ventricle	heart
6	chr5:107311200-107314200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr5:107311400-107314600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr5:107312400-107315200	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr5:107312800-107317400	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr5:107313400-107316200	Enhancers	Dnd41	blood
11	chr5:107313400-107317400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
12	chr5:107313600-107314400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr5:107313600-107314400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr5:107313600-107316200	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr5:107313800-107314400	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr5:107313800-107315200	Weak transcription	Gastric	stomach
17	chr5:107313800-107315400	Enhancers	H9 Cell Line	embryonic stem cell
18	chr5:107313800-107316800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr5:107313800-107318600	Weak transcription	Stomach Mucosa	stomach
20	chr5:107313800-107321000	Weak transcription	Lung	lung
21	chr5:107314000-107314600	Enhancers	ES-I3 Cell Line	embryonic stem cell
22	chr5:107314000-107314600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
23	chr5:107314000-107315400	Enhancers	iPS-15b Cell Line	embryonic stem cell
24	chr5:107314000-107316600	Weak transcription	Fetal Kidney	kidney

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links