Variant report

Variant	rs17443045
Chromosome Location	chr5:107472083-107472084
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10515384	0.84[EUR][1000 genomes]
rs12651724	0.93[CHB][hapmap];0.94[JPT][hapmap];0.84[EUR][1000 genomes]
rs12652306	0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12652643	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12652687	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12652883	0.81[CHB][hapmap];0.85[JPT][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12654751	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12655475	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12655932	0.86[CEU][hapmap];0.93[CHB][hapmap];0.81[EUR][1000 genomes]
rs12659666	0.87[CEU][hapmap];0.87[CHB][hapmap];0.94[JPT][hapmap];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13357987	0.86[CEU][hapmap];0.93[CHB][hapmap];0.92[JPT][hapmap];0.84[EUR][1000 genomes]
rs17381296	0.87[CHB][hapmap];0.93[JPT][hapmap];0.84[EUR][1000 genomes]
rs17382278	0.87[CEU][hapmap];0.87[CHB][hapmap];0.94[JPT][hapmap];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17383035	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17384285	0.86[CEU][hapmap];0.93[CHB][hapmap];0.92[JPT][hapmap];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17440508	0.87[CEU][hapmap];0.87[CHB][hapmap];0.94[JPT][hapmap];0.84[EUR][1000 genomes]
rs17440818	0.87[CEU][hapmap];0.87[CHB][hapmap];0.94[JPT][hapmap];0.84[EUR][1000 genomes]
rs17440916	0.87[CEU][hapmap];0.87[CHB][hapmap];0.94[JPT][hapmap];0.84[EUR][1000 genomes]
rs17441920	0.87[CEU][hapmap];0.87[CHB][hapmap];0.94[JPT][hapmap];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17442211	0.83[CEU][hapmap];0.87[CHB][hapmap];0.91[JPT][hapmap];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17442556	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17442864	0.92[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17449654	0.87[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17449723	0.87[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2042187	0.87[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap];0.84[EUR][1000 genomes]
rs286821	0.81[CHB][hapmap]
rs34385	0.81[CHB][hapmap]
rs34410	0.81[CHB][hapmap]
rs4144476	0.86[CEU][hapmap];0.93[CHB][hapmap];0.92[JPT][hapmap];0.84[EUR][1000 genomes]
rs4144478	0.85[CEU][hapmap];0.91[CHB][hapmap];0.92[JPT][hapmap];0.84[EUR][1000 genomes]
rs4404664	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55862455	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56108486	0.84[EUR][1000 genomes]
rs56287990	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs58805667	0.81[EUR][1000 genomes]
rs59356989	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs59606487	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs59830006	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs60447697	0.84[EUR][1000 genomes]
rs6864731	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6865057	0.87[CEU][hapmap];0.87[CHB][hapmap];0.93[JPT][hapmap];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6872068	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6872913	0.84[EUR][1000 genomes]
rs6884026	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6889772	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6890052	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs723397	0.80[CEU][hapmap]
rs73206538	0.81[EUR][1000 genomes]
rs7704251	0.87[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap];0.81[EUR][1000 genomes]
rs7731562	0.86[CEU][hapmap];0.93[CHB][hapmap];0.92[JPT][hapmap];0.84[EUR][1000 genomes]
rs7735773	0.86[CEU][hapmap];0.93[CHB][hapmap];0.92[JPT][hapmap];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534281	chr5:107357579-107674981	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv830441	chr5:107450392-107614557	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107388400-107510800	Weak transcription	Primary B cells from cord blood	blood
2	chr5:107468600-107475000	Weak transcription	Aorta	Aorta
3	chr5:107470600-107475000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr5:107471000-107477400	Weak transcription	Psoas Muscle	Psoas
5	chr5:107471600-107472200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr5:107471600-107472400	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr5:107472000-107472200	Enhancers	ES-I3 Cell Line	embryonic stem cell

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