Variant report

Variant	rs17442556
Chromosome Location	chr5:107436480-107436481
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10515384	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12651724	0.92[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12651919	0.81[CEU][hapmap]
rs12652306	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12652643	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12652687	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12652883	0.81[CHB][hapmap];0.85[JPT][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12654751	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12655475	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12655932	1.00[CEU][hapmap];0.93[CHB][hapmap];0.87[EUR][1000 genomes]
rs12659666	1.00[CEU][hapmap];0.87[CHB][hapmap];0.94[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13357987	1.00[CEU][hapmap];0.93[CHB][hapmap];0.92[JPT][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17381296	0.93[CEU][hapmap];0.87[CHB][hapmap];0.93[JPT][hapmap];0.90[EUR][1000 genomes]
rs17382278	1.00[CEU][hapmap];0.87[CHB][hapmap];0.94[JPT][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17383035	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17384285	1.00[CEU][hapmap];0.93[CHB][hapmap];0.92[JPT][hapmap];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17438307	0.81[CEU][hapmap]
rs17439150	0.81[EUR][1000 genomes]
rs17439877	0.84[EUR][1000 genomes]
rs17440508	1.00[CEU][hapmap];0.87[CHB][hapmap];0.94[JPT][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17440818	1.00[CEU][hapmap];0.87[CHB][hapmap];0.94[JPT][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17440916	1.00[CEU][hapmap];0.87[CHB][hapmap];0.94[JPT][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17441920	1.00[CEU][hapmap];0.87[CHB][hapmap];0.94[JPT][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17442211	1.00[CEU][hapmap];0.87[CHB][hapmap];0.91[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17442864	0.92[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17443045	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17449654	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17449723	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2042187	1.00[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs286821	0.81[CHB][hapmap]
rs34385	0.81[CHB][hapmap]
rs34410	0.81[CHB][hapmap]
rs4144476	1.00[CEU][hapmap];0.93[CHB][hapmap];0.92[JPT][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4144478	1.00[CEU][hapmap];0.91[CHB][hapmap];0.92[JPT][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4404664	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55862455	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56108486	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs56287990	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58805667	0.87[EUR][1000 genomes]
rs59356989	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs59606487	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs59830006	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60447697	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6864731	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6865057	1.00[CEU][hapmap];0.87[CHB][hapmap];0.93[JPT][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6872068	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6872913	0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6884026	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6889772	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6890052	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs723397	0.93[CEU][hapmap];0.85[EUR][1000 genomes]
rs73204796	0.81[EUR][1000 genomes]
rs73206538	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7704251	1.00[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7731562	1.00[CEU][hapmap];0.93[CHB][hapmap];0.92[JPT][hapmap];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7735773	1.00[CEU][hapmap];0.93[CHB][hapmap];0.92[JPT][hapmap];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882682	chr5:107213361-107458336	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv534281	chr5:107357579-107674981	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107388400-107510800	Weak transcription	Primary B cells from cord blood	blood
2	chr5:107416000-107443600	Weak transcription	Primary T cells from cord blood	blood
3	chr5:107419200-107436600	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr5:107421400-107437000	Weak transcription	Psoas Muscle	Psoas
5	chr5:107427400-107443800	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr5:107428200-107438200	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr5:107429400-107437400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr5:107431200-107436600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr5:107432600-107436600	Weak transcription	Fetal Lung	lung
10	chr5:107435800-107436800	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr5:107436000-107437400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr5:107436400-107437000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
13	chr5:107436400-107437600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr5:107436400-107437800	Enhancers	Brain Anterior Caudate	brain
15	chr5:107436400-107437800	Enhancers	Brain Hippocampus Middle	brain
16	chr5:107436400-107437800	Enhancers	Brain Substantia Nigra	brain

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