Variant report

Variant	rs12661213
Chromosome Location	chr6:73620060-73620061
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12660812	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12662338	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16882940	1.00[EUR][1000 genomes]
rs16882946	1.00[EUR][1000 genomes]
rs16882962	1.00[EUR][1000 genomes]
rs1935522	1.00[EUR][1000 genomes]
rs35148724	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7742114	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7764198	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9446782	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9446786	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9446788	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830691	chr6:73530978-73743648	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
2	nsv886155	chr6:73551937-73649330	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73607600-73715400	Weak transcription	Primary B cells from cord blood	blood
2	chr6:73616000-73621200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:73616000-73621200	Weak transcription	HMEC	breast
4	chr6:73616200-73626600	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr6:73616400-73620600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr6:73616400-73620800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr6:73616400-73623800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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