Variant report

Variant	rs9446788
Chromosome Location	chr6:73623807-73623808
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12660812	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12661213	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12662338	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1317539	1.00[CHB][hapmap]
rs16882940	1.00[EUR][1000 genomes]
rs16882946	1.00[EUR][1000 genomes]
rs16882962	1.00[EUR][1000 genomes]
rs1935522	1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs35148724	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7742114	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7764198	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9446782	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9446786	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830691	chr6:73530978-73743648	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
2	nsv886155	chr6:73551937-73649330	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73607600-73715400	Weak transcription	Primary B cells from cord blood	blood
2	chr6:73616200-73626600	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr6:73620600-73624000	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr6:73620600-73624400	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr6:73620600-73624600	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr6:73620600-73624600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr6:73621200-73624400	Enhancers	HMEC	breast
8	chr6:73622000-73624600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr6:73622400-73625800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr6:73622800-73624600	Enhancers	NHEK	skin
11	chr6:73623000-73624600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr6:73623200-73624200	Weak transcription	Placenta	Placenta
13	chr6:73623200-73624600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr6:73623400-73624000	Enhancers	Monocytes-CD14+_RO01746	blood
15	chr6:73623600-73624000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr6:73623600-73624000	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr6:73623800-73624600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr6:73623800-73624600	Enhancers	Psoas Muscle	Psoas

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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