Variant report

Variant	rs1317539
Chromosome Location	chr6:73649450-73649451
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12660812	1.00[CHB][hapmap]
rs12662338	1.00[CHB][hapmap]
rs1935522	1.00[CHB][hapmap]
rs7742114	1.00[CHB][hapmap]
rs7764198	1.00[CHB][hapmap]
rs9446782	1.00[CHB][hapmap]
rs9446788	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830691	chr6:73530978-73743648	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73607600-73715400	Weak transcription	Primary B cells from cord blood	blood
2	chr6:73624600-73658600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr6:73642200-73651400	Weak transcription	Fetal Brain Male	brain
4	chr6:73647200-73649800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:73647800-73650400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr6:73648800-73650600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links