Variant report

Variant	rs1935522
Chromosome Location	chr6:73572827-73572828
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12660812	1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs12661213	1.00[EUR][1000 genomes]
rs12662338	1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs1317539	1.00[CHB][hapmap]
rs16882940	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16882946	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16882962	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35148724	1.00[EUR][1000 genomes]
rs7742114	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs7764198	1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs9446782	1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs9446786	1.00[EUR][1000 genomes]
rs9446788	1.00[CHB][hapmap];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830690	chr6:73391428-73574304	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv830691	chr6:73530978-73743648	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
3	nsv470834	chr6:73546750-73596605	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
4	nsv886155	chr6:73551937-73649330	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73569600-73575600	Enhancers	HSMMtube	muscle
2	chr6:73569800-73573200	Enhancers	HUVEC	blood vessel
3	chr6:73570000-73573200	Enhancers	Osteobl	bone
4	chr6:73570200-73573200	Enhancers	NHLF	lung
5	chr6:73570400-73573200	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr6:73570400-73576600	Enhancers	Skeletal Muscle Female	skeletal muscle
7	chr6:73570600-73573200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr6:73571000-73573200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr6:73571000-73576200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr6:73571600-73573000	Enhancers	Adipose Nuclei	Adipose
11	chr6:73571600-73573000	Enhancers	HMEC	breast
12	chr6:73571600-73573200	Enhancers	NHEK	skin
13	chr6:73571600-73574200	Enhancers	Psoas Muscle	Psoas
14	chr6:73572000-73573800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr6:73572000-73575400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr6:73572000-73590200	Weak transcription	GM12878-XiMat	blood
17	chr6:73572200-73573000	Weak transcription	Fetal Heart	heart
18	chr6:73572200-73573600	Weak transcription	Liver	Liver
19	chr6:73572200-73575200	Weak transcription	Primary neutrophils fromperipheralblood	blood
20	chr6:73572200-73576400	Enhancers	HSMM	muscle
21	chr6:73572400-73575000	Weak transcription	Monocytes-CD14+_RO01746	blood
22	chr6:73572400-73576000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr6:73572600-73573200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr6:73572600-73573400	Enhancers	Muscle Satellite Cultured Cells	--
25	chr6:73572600-73573600	Weak transcription	Brain Substantia Nigra	brain
26	chr6:73572600-73573800	Weak transcription	Aorta	Aorta
27	chr6:73572600-73574800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
28	chr6:73572600-73574800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr6:73572600-73575200	Weak transcription	Primary monocytes fromperipheralblood	blood
30	chr6:73572600-73575200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr6:73572600-73575200	Weak transcription	NHDF-Ad	bronchial
32	chr6:73572600-73583800	Weak transcription	Primary hematopoietic stem cells	blood
33	chr6:73572800-73573000	Enhancers	Skeletal Muscle Male	skeletal muscle
34	chr6:73572800-73575400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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