Variant report

Variant	rs12661389
Chromosome Location	chr6:35104018-35104019
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10947537	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap]
rs12525532	0.82[CHD][hapmap]
rs1535815	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2257663	0.88[CEU][hapmap];0.94[CHB][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2494099	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2494100	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2689091	1.00[ASW][hapmap];0.81[CEU][hapmap];0.89[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];0.82[MKK][hapmap];0.93[TSI][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2689094	0.85[CEU][hapmap];0.94[CHB][hapmap];0.84[JPT][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2689096	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs2762335	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2762337	0.83[ASN][1000 genomes]
rs2762338	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2762339	0.83[EUR][1000 genomes]
rs2762340	0.88[CEU][hapmap];0.94[CHB][hapmap];0.88[JPT][hapmap];0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2762343	0.85[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[TSI][hapmap]
rs2762345	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2820223	0.82[ASW][hapmap];0.84[CHB][hapmap];0.91[CHD][hapmap];0.80[GIH][hapmap]
rs2820226	0.87[CEU][hapmap];0.80[CHB][hapmap];0.93[JPT][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2820228	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2820232	1.00[ASW][hapmap];0.83[CHB][hapmap];0.86[CHD][hapmap];0.84[GIH][hapmap]
rs2820233	0.84[CHB][hapmap]
rs2820240	0.84[JPT][hapmap]
rs820076	0.81[GIH][hapmap]
rs820084	0.81[GIH][hapmap]
rs820089	0.81[GIH][hapmap]
rs847852	1.00[ASW][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3441631	chr6:35103524-35106522	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv511879	chr6:35103668-35106088	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv3364376	chr6:35103875-35105623	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv2633690	chr6:35103902-35106024	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35103600-35104200	Enhancers	GM12878-XiMat	blood
2	chr6:35103800-35104200	Enhancers	Primary B cells from peripheral blood	blood
3	chr6:35103800-35104200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr6:35104000-35104200	Enhancers	Adipose Nuclei	Adipose
5	chr6:35104000-35104200	Enhancers	Fetal Lung	lung
6	chr6:35104000-35108600	Weak transcription	Ovary	ovary

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