Variant report

Variant	rs2257663
Chromosome Location	chr6:35049054-35049055
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:35027650..35029628-chr6:35048238..35049961,2	K562	blood:
2	chr6:35048678..35049279-chr6:35107435..35108070,2	MCF-7	breast:
3	chr6:35039756..35041851-chr6:35046944..35049669,2	K562	blood:
4	chr6:35045958..35049879-chr6:35052642..35055370,3	K562	blood:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10947537	0.92[CEU][hapmap];0.94[CHB][hapmap];0.80[JPT][hapmap]
rs12661389	0.88[CEU][hapmap];0.94[CHB][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1535815	0.92[CEU][hapmap];0.94[CHB][hapmap];0.80[JPT][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2494099	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2494100	0.96[CEU][hapmap];0.95[CHB][hapmap];0.81[JPT][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2689091	0.92[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2689094	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2689096	0.81[CHB][hapmap];0.81[JPT][hapmap]
rs2762335	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2762337	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2762338	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2762339	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2762340	0.85[CEU][hapmap];0.89[CHB][hapmap];0.84[JPT][hapmap];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2762343	0.81[CEU][hapmap];0.94[CHB][hapmap];0.80[JPT][hapmap]
rs2762345	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2820223	0.89[CHB][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs2820226	1.00[CEU][hapmap];0.88[CHB][hapmap];0.94[JPT][hapmap];0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2820228	0.93[CEU][hapmap];0.95[CHB][hapmap];0.81[JPT][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2820232	0.88[CHB][hapmap];0.85[ASN][1000 genomes]
rs2820233	0.90[CHB][hapmap];0.81[JPT][hapmap];0.83[ASN][1000 genomes]
rs2820234	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022844	chr6:34317219-35060519	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv538195	chr6:34317219-35060519	Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
3	nsv869750	chr6:35031548-35085585	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35016200-35055000	Weak transcription	Hela-S3	cervix
2	chr6:35017800-35053000	Weak transcription	Small Intestine	intestine
3	chr6:35018400-35052800	Weak transcription	Fetal Kidney	kidney
4	chr6:35018600-35051000	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr6:35018800-35060600	Strong transcription	Primary neutrophils fromperipheralblood	blood
6	chr6:35020000-35059800	Strong transcription	Fetal Intestine Small	intestine
7	chr6:35020400-35059400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr6:35021800-35055400	Weak transcription	HSMM	muscle
9	chr6:35024800-35062000	Weak transcription	A549	lung
10	chr6:35025600-35056000	Strong transcription	Liver	Liver
11	chr6:35026600-35059200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr6:35028600-35060000	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr6:35029000-35050800	Weak transcription	NHLF	lung
14	chr6:35029400-35051400	Weak transcription	Stomach Mucosa	stomach
15	chr6:35029800-35051200	Weak transcription	Osteobl	bone
16	chr6:35032800-35051200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr6:35033000-35050200	Weak transcription	Dnd41	blood
18	chr6:35036200-35059200	Strong transcription	Primary T cells from cord blood	blood
19	chr6:35036800-35056200	Strong transcription	Fetal Stomach	stomach
20	chr6:35037000-35061800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr6:35037200-35050000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr6:35037200-35050000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr6:35039400-35050400	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr6:35039400-35060600	Strong transcription	Fetal Intestine Large	intestine
25	chr6:35039600-35051000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr6:35039800-35049800	Weak transcription	Primary B cells from cord blood	blood
27	chr6:35039800-35051800	Strong transcription	HSMMtube	muscle
28	chr6:35040000-35049200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
29	chr6:35040000-35057000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr6:35040600-35049200	Weak transcription	HUVEC	blood vessel
31	chr6:35041800-35056800	Weak transcription	Fetal Heart	heart
32	chr6:35042200-35059200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr6:35042600-35050000	Weak transcription	Right Atrium	heart
34	chr6:35044400-35058800	Strong transcription	Duodenum Mucosa	Duodenum
35	chr6:35044600-35057600	Strong transcription	Rectal Mucosa Donor 29	rectum
36	chr6:35044600-35058200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr6:35044800-35049200	Strong transcription	Brain Substantia Nigra	brain
38	chr6:35044800-35049200	Strong transcription	Colonic Mucosa	Colon
39	chr6:35044800-35049400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr6:35044800-35049600	Strong transcription	HepG2	liver
41	chr6:35044800-35050000	Strong transcription	Brain Cingulate Gyrus	brain
42	chr6:35044800-35055600	Strong transcription	Aorta	Aorta
43	chr6:35044800-35056800	Strong transcription	Rectal Smooth Muscle	rectum
44	chr6:35044800-35057800	Strong transcription	Rectal Mucosa Donor 31	rectum
45	chr6:35044800-35058800	Strong transcription	Gastric	stomach
46	chr6:35044800-35059000	Strong transcription	Left Ventricle	heart
47	chr6:35045000-35049600	Strong transcription	Colon Smooth Muscle	Colon
48	chr6:35045000-35052000	Strong transcription	Primary B cells from peripheral blood	blood
49	chr6:35045000-35057000	Strong transcription	Primary T helper cells fromperipheralblood	blood
50	chr6:35045000-35057000	Strong transcription	Sigmoid Colon	Sigmoid Colon

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