Variant report

Variant	rs2820226
Chromosome Location	chr6:35045281-35045282
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:35039881..35041859-chr6:35044532..35047324,2	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10947537	0.91[CEU][hapmap];0.80[CHB][hapmap];0.93[JPT][hapmap]
rs12661389	0.87[CEU][hapmap];0.80[CHB][hapmap];0.93[JPT][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1535815	0.91[CEU][hapmap];0.80[CHB][hapmap];0.93[JPT][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2257663	1.00[CEU][hapmap];0.88[CHB][hapmap];0.94[JPT][hapmap];0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2494099	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2494100	0.95[CEU][hapmap];0.82[CHB][hapmap];0.94[JPT][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2689091	0.95[CEU][hapmap];0.93[JPT][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2689094	0.96[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2689096	0.93[JPT][hapmap]
rs2762335	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2762337	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2762338	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2762339	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2762340	0.83[CEU][hapmap];0.80[JPT][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2762343	0.80[CHB][hapmap];0.93[JPT][hapmap]
rs2762345	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2820223	0.93[JPT][hapmap];0.88[ASN][1000 genomes]
rs2820228	0.91[CEU][hapmap];0.82[CHB][hapmap];0.93[JPT][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2820232	0.88[ASN][1000 genomes]
rs2820233	0.81[JPT][hapmap];0.87[ASN][1000 genomes]
rs2820234	0.87[ASN][1000 genomes]
rs2820240	0.88[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022844	chr6:34317219-35060519	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv538195	chr6:34317219-35060519	Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
3	nsv869750	chr6:35031548-35085585	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35016200-35055000	Weak transcription	Hela-S3	cervix
2	chr6:35017800-35053000	Weak transcription	Small Intestine	intestine
3	chr6:35018400-35052800	Weak transcription	Fetal Kidney	kidney
4	chr6:35018600-35051000	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr6:35018800-35060600	Strong transcription	Primary neutrophils fromperipheralblood	blood
6	chr6:35020000-35059800	Strong transcription	Fetal Intestine Small	intestine
7	chr6:35020400-35059400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr6:35021800-35055400	Weak transcription	HSMM	muscle
9	chr6:35024800-35062000	Weak transcription	A549	lung
10	chr6:35025600-35056000	Strong transcription	Liver	Liver
11	chr6:35026600-35059200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr6:35028400-35048800	Weak transcription	Psoas Muscle	Psoas
13	chr6:35028600-35060000	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr6:35028800-35045400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr6:35029000-35046200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr6:35029000-35050800	Weak transcription	NHLF	lung
17	chr6:35029200-35045800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr6:35029200-35046400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr6:35029400-35046200	Weak transcription	Primary T helper cells PMA-I stimulated	--
20	chr6:35029400-35051400	Weak transcription	Stomach Mucosa	stomach
21	chr6:35029800-35051200	Weak transcription	Osteobl	bone
22	chr6:35030000-35047400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr6:35032800-35051200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr6:35033000-35050200	Weak transcription	Dnd41	blood
25	chr6:35033200-35046000	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr6:35034400-35046200	Weak transcription	Fetal Thymus	thymus
27	chr6:35034600-35048200	Weak transcription	Primary hematopoietic stem cells	blood
28	chr6:35034800-35045800	Weak transcription	Brain Angular Gyrus	brain
29	chr6:35036200-35059200	Strong transcription	Primary T cells from cord blood	blood
30	chr6:35036600-35046400	Weak transcription	Fetal Lung	lung
31	chr6:35036800-35048000	Strong transcription	Fetal Muscle Leg	muscle
32	chr6:35036800-35056200	Strong transcription	Fetal Stomach	stomach
33	chr6:35037000-35048000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr6:35037000-35061800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
35	chr6:35037200-35050000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr6:35037200-35050000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr6:35038400-35048200	Strong transcription	Monocytes-CD14+_RO01746	blood
38	chr6:35039200-35048400	Strong transcription	Primary monocytes fromperipheralblood	blood
39	chr6:35039400-35050400	Weak transcription	H9 Cell Line	embryonic stem cell
40	chr6:35039400-35060600	Strong transcription	Fetal Intestine Large	intestine
41	chr6:35039600-35046400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
42	chr6:35039600-35048000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
43	chr6:35039600-35051000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
44	chr6:35039800-35049800	Weak transcription	Primary B cells from cord blood	blood
45	chr6:35039800-35051800	Strong transcription	HSMMtube	muscle
46	chr6:35040000-35046400	Weak transcription	HUES48 Cell Line	embryonic stem cell
47	chr6:35040000-35049200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
48	chr6:35040000-35057000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr6:35040200-35047200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
50	chr6:35040200-35048600	Strong transcription	Fetal Muscle Trunk	muscle

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