Variant report

Variant	rs12661809
Chromosome Location	chr6:131176286-131176287
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:131175601..131177142-chr6:131178677..131181182,2	K562	blood:

Variant related genes	Relation type
ENSG00000079819	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1043598	0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10499174	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11961204	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12662602	1.00[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs12664355	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12965	0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17059681	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17059683	1.00[ASN][1000 genomes]
rs17059698	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17059702	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2236078	0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2275063	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2275065	0.89[ASN][1000 genomes]
rs3777450	0.89[ASN][1000 genomes]
rs3777453	0.94[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs3822864	0.89[ASN][1000 genomes]
rs56027377	0.89[ASN][1000 genomes]
rs73774307	0.89[ASN][1000 genomes]
rs73775336	0.92[ASN][1000 genomes]
rs73775337	0.92[ASN][1000 genomes]
rs7747881	0.85[ASN][1000 genomes]
rs7769153	0.85[ASN][1000 genomes]

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131149400-131213200	Weak transcription	Pancreas	Pancrea
2	chr6:131150600-131183400	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr6:131151600-131216600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr6:131158200-131179400	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr6:131158200-131190600	Weak transcription	Spleen	Spleen
6	chr6:131158200-131214400	Weak transcription	Lung	lung
7	chr6:131159000-131229000	Weak transcription	Colonic Mucosa	Colon
8	chr6:131160600-131179200	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr6:131161000-131186600	Weak transcription	Brain Cingulate Gyrus	brain
10	chr6:131161600-131176800	Weak transcription	Dnd41	blood
11	chr6:131161800-131186400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr6:131168400-131190600	Weak transcription	Duodenum Mucosa	Duodenum
13	chr6:131168600-131179000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr6:131168800-131214600	Weak transcription	Fetal Kidney	kidney
15	chr6:131170000-131189000	Strong transcription	Adipose Nuclei	Adipose
16	chr6:131170200-131179000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr6:131170400-131178400	Weak transcription	NHEK	skin
18	chr6:131170400-131181200	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr6:131170400-131193000	Weak transcription	Fetal Thymus	thymus
20	chr6:131170400-131217400	Weak transcription	Psoas Muscle	Psoas
21	chr6:131170600-131178600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr6:131170600-131184600	Weak transcription	Primary B cells from peripheral blood	blood
23	chr6:131170600-131187000	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr6:131170600-131190400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr6:131170600-131192600	Weak transcription	Primary hematopoietic stem cells	blood
26	chr6:131170600-131193000	Weak transcription	Primary T cells from cord blood	blood
27	chr6:131170600-131213800	Weak transcription	GM12878-XiMat	blood
28	chr6:131170800-131189000	Strong transcription	Fetal Muscle Trunk	muscle
29	chr6:131171200-131209600	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr6:131171200-131223200	Weak transcription	Right Ventricle	heart
31	chr6:131171400-131220200	Weak transcription	Fetal Brain Male	brain
32	chr6:131172600-131185600	Weak transcription	Gastric	stomach
33	chr6:131172600-131186600	Weak transcription	Brain Angular Gyrus	brain
34	chr6:131172800-131183400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
35	chr6:131172800-131189400	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr6:131173000-131179200	Weak transcription	Brain Hippocampus Middle	brain
37	chr6:131173000-131207000	Weak transcription	Brain Substantia Nigra	brain
38	chr6:131173200-131185200	Weak transcription	Thymus	Thymus
39	chr6:131173400-131190800	Weak transcription	Esophagus	oesophagus
40	chr6:131174400-131185600	Weak transcription	Primary B cells from cord blood	blood
41	chr6:131174800-131179000	Weak transcription	Stomach Smooth Muscle	stomach
42	chr6:131175000-131182000	Weak transcription	Placenta	Placenta
43	chr6:131175000-131185400	Weak transcription	Aorta	Aorta
44	chr6:131175000-131222400	Weak transcription	Skeletal Muscle Male	skeletal muscle
45	chr6:131175200-131178800	Weak transcription	Left Ventricle	heart
46	chr6:131175200-131179000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr6:131175200-131179000	Weak transcription	Fetal Intestine Large	intestine
48	chr6:131175200-131179200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr6:131175200-131180400	Strong transcription	Fetal Muscle Leg	muscle
50	chr6:131175200-131181200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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