Variant report

Variant	rs3777453
Chromosome Location	chr6:131238003-131238004
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs1043598	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.91[AFR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10499174	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11961204	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12661081	1.00[CEU][hapmap];0.86[CHB][hapmap];0.92[JPT][hapmap];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12661809	0.94[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs12662602	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12664355	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12965	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.91[AFR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13193246	1.00[CEU][hapmap];0.86[CHB][hapmap];0.92[JPT][hapmap];0.81[ASN][1000 genomes]
rs1332491	0.85[CHB][hapmap];0.93[JPT][hapmap];0.81[ASN][1000 genomes]
rs1338905	0.86[CHB][hapmap];0.92[JPT][hapmap];0.81[ASN][1000 genomes]
rs17059681	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17059683	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs17059698	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17059702	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17059896	1.00[CEU][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17059925	1.00[CEU][hapmap];0.85[CHB][hapmap];0.93[JPT][hapmap];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17831009	1.00[JPT][hapmap]
rs2007339	0.86[CHB][hapmap];0.92[JPT][hapmap];0.81[ASN][1000 genomes]
rs2151069	0.85[CHB][hapmap];0.92[JPT][hapmap];0.81[ASN][1000 genomes]
rs2236078	0.91[AFR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2275063	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2275065	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3777450	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3777463	1.00[CEU][hapmap];0.86[CHB][hapmap];0.92[JPT][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3822864	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4895902	0.92[JPT][hapmap]
rs4897480	0.83[ASN][1000 genomes]
rs4897481	0.83[ASN][1000 genomes]
rs4897482	0.83[ASN][1000 genomes]
rs56027377	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6569716	0.86[CHB][hapmap];0.92[JPT][hapmap];0.81[ASN][1000 genomes]
rs6569718	0.86[CHB][hapmap];0.92[JPT][hapmap];0.81[ASN][1000 genomes]
rs6569720	0.86[CHB][hapmap];0.93[JPT][hapmap]
rs6900810	0.85[CHB][hapmap];0.93[JPT][hapmap];0.81[ASN][1000 genomes]
rs73623428	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73774307	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73774328	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73775336	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73775337	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7747881	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7765007	0.86[CHB][hapmap];0.93[JPT][hapmap];0.83[ASN][1000 genomes]
rs7765757	0.86[CHB][hapmap];0.92[JPT][hapmap];0.81[ASN][1000 genomes]
rs7769153	1.00[CEU][hapmap];0.86[CHB][hapmap];0.92[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9321268	0.81[ASN][1000 genomes]
rs9372988	0.86[CHB][hapmap];0.92[JPT][hapmap];0.81[ASN][1000 genomes]

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131215400-131238200	Weak transcription	Aorta	Aorta
2	chr6:131220600-131281200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr6:131222200-131248400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr6:131222200-131251800	Weak transcription	Primary B cells from cord blood	blood
5	chr6:131222400-131238200	Weak transcription	Dnd41	blood
6	chr6:131222400-131248600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr6:131222600-131241200	Weak transcription	A549	lung
8	chr6:131224400-131241600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr6:131228800-131245800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr6:131229400-131245200	Weak transcription	Adipose Nuclei	Adipose
11	chr6:131229600-131245400	Weak transcription	NHLF	lung
12	chr6:131229600-131248600	Weak transcription	Stomach Mucosa	stomach
13	chr6:131229600-131249600	Weak transcription	Osteobl	bone
14	chr6:131229800-131242400	Weak transcription	HepG2	liver
15	chr6:131233800-131241400	Weak transcription	Fetal Muscle Trunk	muscle
16	chr6:131234000-131250200	Weak transcription	Ovary	ovary
17	chr6:131234000-131250600	Weak transcription	Fetal Stomach	stomach
18	chr6:131234400-131239000	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr6:131234600-131238200	Weak transcription	Brain Hippocampus Middle	brain
20	chr6:131234600-131244200	Weak transcription	Brain Substantia Nigra	brain
21	chr6:131234600-131244200	Weak transcription	Small Intestine	intestine
22	chr6:131234600-131244600	Weak transcription	Left Ventricle	heart
23	chr6:131234600-131248600	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr6:131234600-131249400	Weak transcription	Primary hematopoietic stem cells	blood
25	chr6:131234600-131250200	Weak transcription	Pancreas	Pancrea
26	chr6:131234800-131238200	Weak transcription	Thymus	Thymus
27	chr6:131234800-131244400	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr6:131234800-131245000	Weak transcription	HSMM	muscle
29	chr6:131234800-131246800	Weak transcription	Primary B cells from peripheral blood	blood
30	chr6:131234800-131247200	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr6:131234800-131254000	Weak transcription	HUES64 Cell Line	embryonic stem cell
32	chr6:131234800-131266600	Weak transcription	GM12878-XiMat	blood
33	chr6:131235800-131244200	Weak transcription	Fetal Muscle Leg	muscle
34	chr6:131236400-131254000	Weak transcription	H9 Cell Line	embryonic stem cell
35	chr6:131237000-131239400	Weak transcription	Fetal Lung	lung
36	chr6:131237600-131238400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr6:131237800-131239400	Enhancers	Breast Myoepithelial Primary Cells	Breast
38	chr6:131238000-131244800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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