Variant report

Variant	rs4897481
Chromosome Location	chr6:131331638-131331639
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:131314347..131316651-chr6:131330693..131332360,2	K562	blood:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs12661081	0.99[ASN][1000 genomes]
rs13193246	0.99[ASN][1000 genomes]
rs1332490	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1332491	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1338905	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17059896	1.00[ASN][1000 genomes]
rs17059925	1.00[ASN][1000 genomes]
rs1855077	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1888959	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1976982	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2007339	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2151069	0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2225557	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2275065	0.83[ASN][1000 genomes]
rs3777450	0.83[ASN][1000 genomes]
rs3777453	0.83[ASN][1000 genomes]
rs3777463	0.91[ASN][1000 genomes]
rs3822864	0.83[ASN][1000 genomes]
rs4895902	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4897480	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4897482	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4897488	0.89[EUR][1000 genomes]
rs4897490	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56027377	0.83[ASN][1000 genomes]
rs6569716	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6569718	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6569720	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6569722	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6569725	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6900810	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6908917	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6909134	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6928986	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6942081	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73623428	1.00[ASN][1000 genomes]
rs73774307	0.83[ASN][1000 genomes]
rs73774328	0.93[ASN][1000 genomes]
rs7742376	0.89[EUR][1000 genomes]
rs7747881	0.87[ASN][1000 genomes]
rs7765007	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7765757	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7769153	0.87[ASN][1000 genomes]
rs9321268	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9372988	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9689026	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032955	chr6:131298803-131818502	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538443	chr6:131298803-131818502	Active TSS Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131322600-131333200	Weak transcription	Pancreas	Pancrea
2	chr6:131324000-131334200	Weak transcription	Small Intestine	intestine
3	chr6:131326000-131333800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr6:131327000-131333200	Weak transcription	Ovary	ovary
5	chr6:131328400-131332200	Weak transcription	Brain Hippocampus Middle	brain
6	chr6:131328400-131334800	Weak transcription	A549	lung
7	chr6:131329600-131333800	Weak transcription	Brain Angular Gyrus	brain
8	chr6:131329800-131332000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr6:131329800-131332000	Weak transcription	Brain Cingulate Gyrus	brain
10	chr6:131329800-131332200	Weak transcription	Brain Substantia Nigra	brain
11	chr6:131329800-131333200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
12	chr6:131329800-131334600	Weak transcription	Fetal Stomach	stomach
13	chr6:131329800-131334800	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr6:131329800-131334800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr6:131329800-131336400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr6:131329800-131347400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr6:131330000-131335000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr6:131330000-131335000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr6:131330200-131334800	Weak transcription	Fetal Muscle Leg	muscle
20	chr6:131330200-131335400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr6:131330400-131333600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr6:131330400-131336400	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr6:131330600-131334400	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr6:131330800-131334600	Weak transcription	Primary hematopoietic stem cells	blood
25	chr6:131331200-131332800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr6:131331200-131334800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr6:131331400-131332200	Enhancers	Left Ventricle	heart
28	chr6:131331400-131333800	Weak transcription	Fetal Lung	lung
29	chr6:131331400-131334800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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