Variant report

Variant	rs73774328
Chromosome Location	chr6:131271454-131271455
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs12661081	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12662602	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13193246	0.91[ASN][1000 genomes]
rs1332491	0.91[ASN][1000 genomes]
rs1338905	0.91[ASN][1000 genomes]
rs17059896	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17059925	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2007339	0.91[ASN][1000 genomes]
rs2151069	0.91[ASN][1000 genomes]
rs2225557	0.89[ASN][1000 genomes]
rs2275063	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2275065	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3777450	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3777453	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3777463	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3822864	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4895902	0.83[ASN][1000 genomes]
rs4897480	0.93[ASN][1000 genomes]
rs4897481	0.93[ASN][1000 genomes]
rs4897482	0.93[ASN][1000 genomes]
rs4897490	0.86[ASN][1000 genomes]
rs56027377	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6569716	0.91[ASN][1000 genomes]
rs6569718	0.91[ASN][1000 genomes]
rs6569720	0.86[ASN][1000 genomes]
rs6569722	0.88[ASN][1000 genomes]
rs6569725	0.81[ASN][1000 genomes]
rs6900810	0.91[ASN][1000 genomes]
rs6942081	0.88[ASN][1000 genomes]
rs73623428	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73774307	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73775336	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73775337	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7747881	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7765007	0.93[ASN][1000 genomes]
rs7765757	0.91[ASN][1000 genomes]
rs7769153	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9321268	0.91[ASN][1000 genomes]
rs9372988	0.91[ASN][1000 genomes]
rs9689026	0.88[ASN][1000 genomes]

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131220600-131281200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr6:131244200-131279000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr6:131253000-131272800	Weak transcription	Dnd41	blood
4	chr6:131253000-131302200	Weak transcription	Primary B cells from cord blood	blood
5	chr6:131255000-131274600	Weak transcription	Fetal Stomach	stomach
6	chr6:131255200-131276000	Weak transcription	Left Ventricle	heart
7	chr6:131255400-131276200	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr6:131255400-131288800	Weak transcription	Fetal Kidney	kidney
9	chr6:131255800-131276200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr6:131255800-131277400	Weak transcription	Psoas Muscle	Psoas
11	chr6:131256000-131279400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr6:131257400-131281800	Weak transcription	Colon Smooth Muscle	Colon
13	chr6:131260000-131286200	Weak transcription	HSMMtube	muscle
14	chr6:131263600-131272800	Weak transcription	Fetal Muscle Trunk	muscle
15	chr6:131264800-131277800	Weak transcription	Gastric	stomach
16	chr6:131265600-131276000	Weak transcription	Duodenum Mucosa	Duodenum
17	chr6:131265800-131274400	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr6:131266000-131272600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr6:131266000-131275000	Weak transcription	A549	lung
20	chr6:131266000-131280600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr6:131266000-131283800	Weak transcription	Lung	lung
22	chr6:131266000-131287600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr6:131266600-131274400	Weak transcription	Ovary	ovary
24	chr6:131266800-131274400	Weak transcription	Aorta	Aorta
25	chr6:131266800-131277200	Weak transcription	Brain Cingulate Gyrus	brain
26	chr6:131266800-131287200	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr6:131267000-131286000	Weak transcription	Brain Angular Gyrus	brain
28	chr6:131267000-131294800	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr6:131267200-131273600	Weak transcription	Fetal Intestine Small	intestine
30	chr6:131267200-131277000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr6:131267200-131277200	Weak transcription	Small Intestine	intestine
32	chr6:131267200-131281200	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr6:131267200-131282200	Weak transcription	Primary B cells from peripheral blood	blood
34	chr6:131267400-131272800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr6:131267400-131273000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
36	chr6:131267400-131279600	Weak transcription	HMEC	breast
37	chr6:131267400-131280200	Weak transcription	Brain Anterior Caudate	brain
38	chr6:131267400-131281600	Weak transcription	GM12878-XiMat	blood
39	chr6:131267400-131286000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr6:131267400-131287200	Weak transcription	HUES48 Cell Line	embryonic stem cell
41	chr6:131267600-131273200	Weak transcription	Fetal Lung	lung
42	chr6:131267600-131275600	Weak transcription	HUES6 Cell Line	embryonic stem cell
43	chr6:131267600-131275600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
44	chr6:131267600-131284000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr6:131267600-131287200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
46	chr6:131267800-131273000	Weak transcription	HUES64 Cell Line	embryonic stem cell
47	chr6:131267800-131276000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr6:131267800-131286000	Weak transcription	NHDF-Ad	bronchial
49	chr6:131267800-131288200	Weak transcription	NH-A	brain
50	chr6:131268000-131272800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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