Variant report

Variant	rs7765007
Chromosome Location	chr6:131316927-131316928
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:131315063..131319748-chr6:131319876..131324209,7	MCF-7	breast:
2	chr6:131315398..131317162-chr6:131319335..131320916,2	K562	blood:

Variant related genes	Relation type
ENSG00000079819	Chromatin interaction

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs1043598	0.92[JPT][hapmap]
rs10499174	0.93[JPT][hapmap]
rs12661081	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs12664355	0.92[JPT][hapmap]
rs12965	0.92[JPT][hapmap]
rs13193246	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs1332490	0.90[CEU][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1332491	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1338905	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17059681	0.92[JPT][hapmap]
rs17059683	0.93[JPT][hapmap]
rs17059698	0.93[JPT][hapmap]
rs17059702	0.93[JPT][hapmap]
rs17059896	0.93[JPT][hapmap];1.00[ASN][1000 genomes]
rs17059925	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17831009	0.92[JPT][hapmap]
rs1855077	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1888959	0.89[CEU][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1976982	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2007339	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2151069	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2225557	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2275063	0.93[JPT][hapmap]
rs2275065	0.83[ASN][1000 genomes]
rs3777450	0.93[JPT][hapmap];0.83[ASN][1000 genomes]
rs3777453	0.86[CHB][hapmap];0.93[JPT][hapmap];0.83[ASN][1000 genomes]
rs3777463	0.88[CHB][hapmap];0.85[JPT][hapmap];0.91[ASN][1000 genomes]
rs3822864	0.93[JPT][hapmap];0.83[ASN][1000 genomes]
rs4895902	0.89[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4897480	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4897481	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4897482	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4897488	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4897490	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56027377	0.83[ASN][1000 genomes]
rs6569716	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6569718	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6569720	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6569722	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6569725	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6900810	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6908917	0.89[CEU][hapmap];0.89[EUR][1000 genomes]
rs6909134	0.84[EUR][1000 genomes]
rs6928986	0.89[CEU][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6942081	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73623428	1.00[ASN][1000 genomes]
rs73774307	0.83[ASN][1000 genomes]
rs73774328	0.93[ASN][1000 genomes]
rs7742376	0.89[CEU][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7747881	0.88[CHB][hapmap];0.93[JPT][hapmap];0.87[ASN][1000 genomes]
rs7765757	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7769153	0.88[CHB][hapmap];0.85[JPT][hapmap];0.87[ASN][1000 genomes]
rs9321268	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9372988	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9689026	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032955	chr6:131298803-131818502	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538443	chr6:131298803-131818502	Active TSS Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131306800-131317000	Weak transcription	Fetal Intestine Small	intestine
2	chr6:131306800-131317200	Weak transcription	NHLF	lung
3	chr6:131306800-131317400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr6:131306800-131320000	Weak transcription	Left Ventricle	heart
5	chr6:131309200-131317200	Weak transcription	Adipose Nuclei	Adipose
6	chr6:131311400-131318400	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr6:131312400-131317000	Weak transcription	Rectal Smooth Muscle	rectum
8	chr6:131312400-131318400	Weak transcription	Fetal Muscle Leg	muscle
9	chr6:131312600-131317400	Weak transcription	Fetal Stomach	stomach
10	chr6:131312600-131321800	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr6:131313000-131318400	Weak transcription	Fetal Kidney	kidney
12	chr6:131313200-131317000	Weak transcription	Brain Hippocampus Middle	brain
13	chr6:131313600-131317400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr6:131313800-131317600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr6:131314000-131317600	Enhancers	Placenta	Placenta
16	chr6:131314000-131318000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr6:131314400-131317400	Weak transcription	HSMM	muscle
18	chr6:131314400-131318000	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr6:131314800-131322200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr6:131314800-131325000	Weak transcription	Fetal Muscle Trunk	muscle
21	chr6:131315200-131321400	Weak transcription	Duodenum Mucosa	Duodenum
22	chr6:131315400-131318000	Weak transcription	A549	lung
23	chr6:131315400-131318600	Weak transcription	Right Atrium	heart
24	chr6:131315400-131320000	Weak transcription	Right Ventricle	heart
25	chr6:131315600-131317400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr6:131315600-131317400	Weak transcription	Small Intestine	intestine
27	chr6:131315600-131318200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
28	chr6:131315600-131321800	Weak transcription	Pancreas	Pancrea
29	chr6:131315800-131317000	Enhancers	HUES6 Cell Line	embryonic stem cell
30	chr6:131315800-131317000	Weak transcription	Brain Anterior Caudate	brain
31	chr6:131315800-131317200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr6:131315800-131317200	Weak transcription	HepG2	liver
33	chr6:131315800-131317400	Weak transcription	HUES48 Cell Line	embryonic stem cell
34	chr6:131315800-131317600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr6:131315800-131317800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
36	chr6:131315800-131317800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
37	chr6:131315800-131317800	Enhancers	K562	blood
38	chr6:131315800-131318000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
39	chr6:131315800-131318400	Weak transcription	H1 Cell Line	embryonic stem cell
40	chr6:131315800-131318600	Weak transcription	H9 Cell Line	embryonic stem cell
41	chr6:131315800-131320000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr6:131315800-131321400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr6:131315800-131321800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
44	chr6:131315800-131321800	Weak transcription	Lung	lung
45	chr6:131315800-131323200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr6:131315800-131325800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
47	chr6:131316000-131318400	Weak transcription	Placenta Amnion	Placenta Amnion
48	chr6:131316600-131319000	Enhancers	HUVEC	blood vessel
49	chr6:131316800-131317400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr6:131316800-131317600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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