Variant report

Variant	rs2275065
Chromosome Location	chr6:131220500-131220501
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1043598	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10499174	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11961204	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12661081	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12661809	0.89[ASN][1000 genomes]
rs12662602	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12664355	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12965	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13193246	0.81[ASN][1000 genomes]
rs1332491	0.81[ASN][1000 genomes]
rs1338905	0.81[ASN][1000 genomes]
rs17059681	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17059683	0.89[ASN][1000 genomes]
rs17059698	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17059702	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17059896	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17059925	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2007339	0.81[ASN][1000 genomes]
rs2151069	0.81[ASN][1000 genomes]
rs2236078	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2275063	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3777450	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3777453	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3777463	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3822864	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4897480	0.83[ASN][1000 genomes]
rs4897481	0.83[ASN][1000 genomes]
rs4897482	0.83[ASN][1000 genomes]
rs56027377	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6569716	0.81[ASN][1000 genomes]
rs6569718	0.81[ASN][1000 genomes]
rs6900810	0.81[ASN][1000 genomes]
rs73623428	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73774307	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73774328	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73775336	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73775337	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7747881	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7765007	0.83[ASN][1000 genomes]
rs7765757	0.81[ASN][1000 genomes]
rs7769153	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9321268	0.81[ASN][1000 genomes]
rs9372988	0.81[ASN][1000 genomes]

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131159000-131229000	Weak transcription	Colonic Mucosa	Colon
2	chr6:131171200-131223200	Weak transcription	Right Ventricle	heart
3	chr6:131175000-131222400	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr6:131175600-131221600	Weak transcription	Rectal Smooth Muscle	rectum
5	chr6:131179400-131222400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr6:131187000-131223200	Weak transcription	Gastric	stomach
7	chr6:131190400-131227000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr6:131190800-131224200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr6:131191000-131234400	Weak transcription	Esophagus	oesophagus
10	chr6:131191200-131224200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr6:131191200-131233000	Weak transcription	Spleen	Spleen
12	chr6:131194200-131222000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr6:131195800-131224200	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr6:131198600-131224200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr6:131201000-131222400	Strong transcription	Dnd41	blood
16	chr6:131201800-131222000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr6:131203600-131234200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr6:131204400-131228600	Weak transcription	Stomach Mucosa	stomach
19	chr6:131205200-131222000	Weak transcription	A549	lung
20	chr6:131208000-131222000	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr6:131209000-131234000	Weak transcription	Fetal Thymus	thymus
22	chr6:131209600-131222000	Weak transcription	HMEC	breast
23	chr6:131209800-131228000	Weak transcription	HUVEC	blood vessel
24	chr6:131210800-131222400	Strong transcription	HepG2	liver
25	chr6:131211000-131228400	Weak transcription	Small Intestine	intestine
26	chr6:131211200-131222000	Weak transcription	NHEK	skin
27	chr6:131211200-131234000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr6:131211400-131224000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
29	chr6:131211400-131234200	Weak transcription	Primary hematopoietic stem cells	blood
30	chr6:131212000-131224600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
31	chr6:131212200-131221800	Weak transcription	NH-A	brain
32	chr6:131212200-131222000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr6:131213400-131223400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr6:131213600-131232200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr6:131215000-131224200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr6:131215000-131228800	Weak transcription	Liver	Liver
37	chr6:131215200-131222000	Weak transcription	H9 Cell Line	embryonic stem cell
38	chr6:131215200-131222400	Strong transcription	Fetal Muscle Leg	muscle
39	chr6:131215200-131234000	Weak transcription	Primary T cells from cord blood	blood
40	chr6:131215200-131234200	Weak transcription	Thymus	Thymus
41	chr6:131215400-131221800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr6:131215400-131223400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr6:131215400-131223800	Weak transcription	Cortex derived primary cultured neurospheres	brain
44	chr6:131215400-131238200	Weak transcription	Aorta	Aorta
45	chr6:131215600-131221800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr6:131215600-131223200	Weak transcription	Lung	lung
47	chr6:131215600-131223400	Weak transcription	Colon Smooth Muscle	Colon
48	chr6:131215600-131228600	Weak transcription	Fetal Intestine Small	intestine
49	chr6:131215600-131233800	Weak transcription	Pancreas	Pancrea
50	chr6:131215800-131221600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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