Variant report

Variant	rs17059896
Chromosome Location	chr6:131297524-131297525
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:131293556..131298037-chr6:131298805..131301642,4	K562	blood:

Variant related genes	Relation type
ENSG00000079819	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs1043598	1.00[CEU][hapmap];0.85[JPT][hapmap];0.85[YRI][hapmap]
rs10499174	1.00[CEU][hapmap];0.86[JPT][hapmap]
rs12661081	1.00[CEU][hapmap];0.93[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12662602	1.00[YRI][hapmap];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12664355	1.00[CEU][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap]
rs12965	1.00[CEU][hapmap];0.84[JPT][hapmap];0.85[YRI][hapmap]
rs13193246	1.00[CEU][hapmap];0.92[JPT][hapmap];0.85[YRI][hapmap];0.84[AFR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1332491	0.93[JPT][hapmap];0.99[ASN][1000 genomes]
rs1338905	0.92[JPT][hapmap];0.99[ASN][1000 genomes]
rs17059681	1.00[CEU][hapmap];0.85[JPT][hapmap]
rs17059683	0.86[JPT][hapmap]
rs17059698	1.00[CEU][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap]
rs17059702	1.00[CEU][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap]
rs17059925	1.00[CEU][hapmap];0.93[JPT][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17831009	0.85[JPT][hapmap]
rs1976982	0.85[ASN][1000 genomes]
rs2007339	0.92[JPT][hapmap];0.99[ASN][1000 genomes]
rs2151069	0.93[JPT][hapmap];0.99[ASN][1000 genomes]
rs2225557	0.96[ASN][1000 genomes]
rs2275063	1.00[CEU][hapmap];0.86[JPT][hapmap];0.87[YRI][hapmap];0.81[EUR][1000 genomes]
rs2275065	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3777450	1.00[CEU][hapmap];0.86[JPT][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3777453	1.00[CEU][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3777463	1.00[CEU][hapmap];0.85[JPT][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3822864	1.00[CEU][hapmap];0.86[JPT][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4895902	0.92[JPT][hapmap];0.89[ASN][1000 genomes]
rs4897480	1.00[ASN][1000 genomes]
rs4897481	1.00[ASN][1000 genomes]
rs4897482	1.00[ASN][1000 genomes]
rs4897490	0.90[ASN][1000 genomes]
rs56027377	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6569716	0.92[JPT][hapmap];0.99[ASN][1000 genomes]
rs6569718	0.92[JPT][hapmap];0.99[ASN][1000 genomes]
rs6569720	0.93[JPT][hapmap];0.90[ASN][1000 genomes]
rs6569722	0.93[ASN][1000 genomes]
rs6569725	0.83[ASN][1000 genomes]
rs6900810	0.93[JPT][hapmap];0.99[ASN][1000 genomes]
rs6942081	0.93[ASN][1000 genomes]
rs73623428	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73774307	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73774328	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73775336	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73775337	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7747881	1.00[CEU][hapmap];0.86[JPT][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7765007	0.93[JPT][hapmap];1.00[ASN][1000 genomes]
rs7765757	0.92[JPT][hapmap];0.96[ASN][1000 genomes]
rs7769153	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9321268	0.99[ASN][1000 genomes]
rs9372988	0.92[JPT][hapmap];0.99[ASN][1000 genomes]
rs9689026	0.93[ASN][1000 genomes]

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131253000-131302200	Weak transcription	Primary B cells from cord blood	blood
2	chr6:131272200-131301000	Weak transcription	Placenta	Placenta
3	chr6:131288200-131306600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:131289600-131298200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:131289600-131300800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr6:131289800-131298000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr6:131291600-131298000	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr6:131291600-131299200	Weak transcription	Pancreas	Pancrea
9	chr6:131291600-131299400	Weak transcription	Right Atrium	heart
10	chr6:131291800-131306200	Weak transcription	Fetal Intestine Small	intestine
11	chr6:131292000-131299400	Weak transcription	Brain Anterior Caudate	brain
12	chr6:131292200-131298200	Weak transcription	Brain Hippocampus Middle	brain
13	chr6:131292400-131298400	Weak transcription	Colon Smooth Muscle	Colon
14	chr6:131292400-131299600	Weak transcription	Fetal Stomach	stomach
15	chr6:131292400-131299800	Weak transcription	Left Ventricle	heart
16	chr6:131292400-131306400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr6:131292600-131299400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr6:131292800-131299200	Weak transcription	Fetal Lung	lung
19	chr6:131292800-131299400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr6:131292800-131302000	Weak transcription	NHLF	lung
21	chr6:131294800-131298200	Enhancers	K562	blood
22	chr6:131295400-131298400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr6:131295400-131299800	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr6:131295400-131301400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr6:131295600-131298000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr6:131295600-131298000	Weak transcription	Brain Substantia Nigra	brain
27	chr6:131295600-131298000	Weak transcription	HepG2	liver
28	chr6:131295600-131299800	Weak transcription	HUES6 Cell Line	embryonic stem cell
29	chr6:131295600-131300000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
30	chr6:131295600-131301400	Weak transcription	HUES64 Cell Line	embryonic stem cell
31	chr6:131295600-131301400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
32	chr6:131296400-131302200	Weak transcription	HSMM	muscle
33	chr6:131296600-131299600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr6:131296800-131300000	Weak transcription	HUVEC	blood vessel
35	chr6:131296800-131302600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr6:131297000-131298600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr6:131297400-131298000	Enhancers	NHDF-Ad	bronchial

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