Variant report

Variant	rs6942081
Chromosome Location	chr6:131379238-131379239
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs12661081	0.94[ASN][1000 genomes]
rs13193246	0.94[ASN][1000 genomes]
rs1332490	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1332491	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1338905	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17059896	0.93[ASN][1000 genomes]
rs17059925	0.93[ASN][1000 genomes]
rs1855077	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1888959	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1976982	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2007339	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2151069	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2225557	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3777463	0.87[ASN][1000 genomes]
rs4895902	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4897480	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4897481	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4897482	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4897488	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4897490	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6569716	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6569718	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6569720	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6569722	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6569725	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6900810	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6908917	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6909134	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6928986	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73623428	0.93[ASN][1000 genomes]
rs73774328	0.88[ASN][1000 genomes]
rs7742376	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7747881	0.83[ASN][1000 genomes]
rs7765007	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7765757	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7769153	0.83[ASN][1000 genomes]
rs9321268	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9372988	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9689026	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032955	chr6:131298803-131818502	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538443	chr6:131298803-131818502	Active TSS Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131373400-131381400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr6:131375600-131380600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr6:131375800-131382400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:131376000-131382600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr6:131376400-131380600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr6:131376400-131380600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr6:131376400-131380600	Weak transcription	Fetal Stomach	stomach
8	chr6:131376400-131381800	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr6:131376800-131380800	Weak transcription	NHLF	lung
10	chr6:131377000-131380600	Weak transcription	NHDF-Ad	bronchial
11	chr6:131377000-131381800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr6:131377200-131381600	Weak transcription	Fetal Intestine Small	intestine
13	chr6:131377200-131382600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr6:131377200-131382600	Weak transcription	Primary T cells from cord blood	blood
15	chr6:131377400-131380600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr6:131377400-131382400	Weak transcription	Fetal Intestine Large	intestine
17	chr6:131377400-131382600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr6:131377400-131382600	Weak transcription	Aorta	Aorta
19	chr6:131377800-131379800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr6:131378000-131380600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr6:131378200-131382200	Weak transcription	Fetal Muscle Trunk	muscle
22	chr6:131378400-131379400	Enhancers	HepG2	liver
23	chr6:131378600-131379400	Weak transcription	A549	lung
24	chr6:131378600-131381000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr6:131378600-131381600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr6:131378600-131382400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr6:131378800-131380000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr6:131378800-131380600	Weak transcription	Brain Anterior Caudate	brain
29	chr6:131378800-131381200	Weak transcription	Primary B cells from cord blood	blood
30	chr6:131379000-131379800	Enhancers	Muscle Satellite Cultured Cells	--
31	chr6:131379200-131379400	Enhancers	NH-A	brain
32	chr6:131379200-131379600	Enhancers	Osteobl	bone
33	chr6:131379200-131380600	Weak transcription	Brain Substantia Nigra	brain
34	chr6:131379200-131380600	Weak transcription	GM12878-XiMat	blood

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