Variant report

Variant	rs12667803
Chromosome Location	chr7:121993071-121993072
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10230333	0.86[ASN][1000 genomes]
rs10241224	1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs10252242	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10280017	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10280231	0.96[CEU][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12538206	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17144341	1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs17365759	1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs1859350	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs6944990	0.96[CEU][hapmap];0.96[YRI][hapmap];0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017029	chr7:121958574-122338623	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121957400-122051200	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr7:121958800-121994400	Weak transcription	Lung	lung
3	chr7:121980800-122018600	Weak transcription	Left Ventricle	heart
4	chr7:121984200-121997800	Weak transcription	Fetal Lung	lung
5	chr7:121984800-122002200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr7:121992200-121993800	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr7:121992400-121993600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr7:121992400-121993800	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr7:121993000-121993200	Enhancers	Ovary	ovary

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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