Variant report
Variant | rs10252242 |
---|---|
Chromosome Location | chr7:121994612-121994613 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr7:121963231..121965147-chr7:121993550..121995065,2 | MCF-7 | breast: |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10216012 | 0.87[ASN][1000 genomes] |
rs10216014 | 0.87[ASN][1000 genomes] |
rs10238734 | 0.87[ASN][1000 genomes] |
rs10247924 | 0.87[ASN][1000 genomes] |
rs10277674 | 0.87[ASN][1000 genomes] |
rs10277721 | 0.87[ASN][1000 genomes] |
rs10277785 | 0.87[ASN][1000 genomes] |
rs10280017 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs10280231 | 0.92[EUR][1000 genomes] |
rs10280555 | 0.87[ASN][1000 genomes] |
rs10487223 | 0.94[ASN][1000 genomes] |
rs12532356 | 0.87[ASN][1000 genomes] |
rs12538206 | 0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12667803 | 0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes] |
rs1443752 | 0.87[ASN][1000 genomes] |
rs16870811 | 0.94[ASN][1000 genomes] |
rs17144227 | 0.87[ASN][1000 genomes] |
rs17144315 | 0.94[ASN][1000 genomes] |
rs17144328 | 0.94[ASN][1000 genomes] |
rs17144333 | 0.94[ASN][1000 genomes] |
rs17364956 | 0.87[ASN][1000 genomes] |
rs17365158 | 0.87[ASN][1000 genomes] |
rs17461878 | 0.87[ASN][1000 genomes] |
rs17462307 | 0.87[ASN][1000 genomes] |
rs17462383 | 0.87[ASN][1000 genomes] |
rs17462418 | 0.87[ASN][1000 genomes] |
rs17462508 | 0.87[ASN][1000 genomes] |
rs1859351 | 0.87[ASN][1000 genomes] |
rs1899691 | 0.87[ASN][1000 genomes] |
rs1899692 | 0.87[ASN][1000 genomes] |
rs45489900 | 0.94[ASN][1000 genomes] |
rs59557479 | 0.87[ASN][1000 genomes] |
rs59563343 | 0.94[ASN][1000 genomes] |
rs62473063 | 0.87[ASN][1000 genomes] |
rs62473065 | 0.87[ASN][1000 genomes] |
rs62473067 | 0.81[ASN][1000 genomes] |
rs62473069 | 0.87[ASN][1000 genomes] |
rs62476011 | 0.81[ASN][1000 genomes] |
rs6944990 | 0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6945851 | 0.87[ASN][1000 genomes] |
rs6950106 | 0.87[ASN][1000 genomes] |
rs6963328 | 0.87[ASN][1000 genomes] |
rs6963586 | 0.87[ASN][1000 genomes] |
rs6967614 | 0.87[ASN][1000 genomes] |
rs6967924 | 0.87[ASN][1000 genomes] |
rs873376 | 0.87[ASN][1000 genomes] |
rs873377 | 0.87[ASN][1000 genomes] |
rs873378 | 0.87[ASN][1000 genomes] |
rs886497 | 0.87[ASN][1000 genomes] |
rs9656292 | 0.87[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1017029 | chr7:121958574-122338623 | Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr7:121957400-122051200 | Weak transcription | Placenta Amnion | Placenta Amnion |
2 | chr7:121980800-122018600 | Weak transcription | Left Ventricle | heart |
3 | chr7:121984200-121997800 | Weak transcription | Fetal Lung | lung |
4 | chr7:121984800-122002200 | Weak transcription | ES-UCSF4 Cell Line | embryonic stem cell |