Variant report

Variant	rs17462508
Chromosome Location	chr7:121990196-121990197
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10216012	0.81[CEU][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10216014	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10229985	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10238734	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10241224	0.84[CEU][hapmap]
rs10247924	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10252242	0.87[ASN][1000 genomes]
rs10277674	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10277721	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10277785	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10280017	0.87[ASN][1000 genomes]
rs10280555	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10487223	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12532356	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12538206	0.87[ASN][1000 genomes]
rs1443752	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16870811	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs17144227	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17144315	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17144328	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs17144333	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs17144341	0.82[CEU][hapmap]
rs17364956	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17365158	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17365759	0.83[CEU][hapmap]
rs17461878	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17462307	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17462383	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17462418	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1859350	0.82[CEU][hapmap]
rs1859351	0.82[CEU][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1899691	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1899692	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs45489900	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59557479	0.86[ASN][1000 genomes]
rs59563343	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62473063	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62473065	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62473067	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62473069	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62476010	0.87[ASN][1000 genomes]
rs62476011	0.93[ASN][1000 genomes]
rs6944990	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs6945851	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6950106	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6963328	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6963586	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6967614	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6967924	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs873376	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs873377	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs873378	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs886497	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9656292	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017029	chr7:121958574-122338623	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121957400-121990800	Weak transcription	Pancreas	Pancrea
2	chr7:121957400-122051200	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr7:121958800-121994400	Weak transcription	Lung	lung
4	chr7:121962600-121993000	Weak transcription	Ovary	ovary
5	chr7:121980800-122018600	Weak transcription	Left Ventricle	heart
6	chr7:121984200-121997800	Weak transcription	Fetal Lung	lung
7	chr7:121984800-122002200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr7:121985600-121992200	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr7:121989400-121990400	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr7:121989400-121990400	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr7:121989600-121990200	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr7:121989600-121990400	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr7:121989800-121990200	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr7:121989800-121990200	Enhancers	H9 Cell Line	embryonic stem cell
15	chr7:121989800-121990400	Enhancers	H1 Cell Line	embryonic stem cell
16	chr7:121989800-121990400	Enhancers	HUES48 Cell Line	embryonic stem cell

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