Variant report

Variant	rs17144341
Chromosome Location	chr7:122006316-122006317
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10216012	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs10216014	1.00[CEU][hapmap];0.84[GIH][hapmap];0.83[TSI][hapmap];0.88[EUR][1000 genomes]
rs10229985	1.00[CEU][hapmap];0.84[GIH][hapmap];0.83[TSI][hapmap];0.88[EUR][1000 genomes]
rs10230333	0.88[ASN][1000 genomes]
rs10238734	0.89[EUR][1000 genomes]
rs10241224	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10247924	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs10277674	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs10277721	0.88[EUR][1000 genomes]
rs10277785	0.88[EUR][1000 genomes]
rs10280231	1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs10280555	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs10487223	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes]
rs12532356	0.83[CEU][hapmap];0.84[GIH][hapmap]
rs12667803	1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs1443752	0.83[CEU][hapmap]
rs16870811	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs17144227	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs17144315	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs17144328	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs17144333	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs17364956	0.80[EUR][1000 genomes]
rs17365158	0.83[CEU][hapmap];0.80[EUR][1000 genomes]
rs17365759	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17461878	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs17462307	0.88[CEU][hapmap]
rs17462383	0.83[CEU][hapmap]
rs17462418	0.83[CEU][hapmap];0.84[GIH][hapmap]
rs17462508	0.82[CEU][hapmap]
rs1859350	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.96[TSI][hapmap];0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1859351	1.00[CEU][hapmap];0.96[GIH][hapmap];0.92[TSI][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1899691	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs1899692	0.83[CEU][hapmap]
rs45489900	0.95[EUR][1000 genomes]
rs59557479	0.84[EUR][1000 genomes]
rs59563343	0.93[EUR][1000 genomes]
rs62473063	0.88[EUR][1000 genomes]
rs62473065	0.89[EUR][1000 genomes]
rs62473067	0.84[EUR][1000 genomes]
rs62473069	0.88[EUR][1000 genomes]
rs6945851	1.00[CEU][hapmap];0.84[GIH][hapmap];0.83[TSI][hapmap];0.88[EUR][1000 genomes]
rs6950106	0.88[EUR][1000 genomes]
rs6963328	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs6963586	0.88[EUR][1000 genomes]
rs6967614	0.88[EUR][1000 genomes]
rs6967924	0.88[EUR][1000 genomes]
rs873376	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs873377	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs873378	1.00[CEU][hapmap];0.84[GIH][hapmap];0.83[TSI][hapmap];0.88[EUR][1000 genomes]
rs886497	1.00[CEU][hapmap];0.84[GIH][hapmap];0.87[TSI][hapmap];0.88[EUR][1000 genomes]
rs9632751	0.83[YRI][hapmap]
rs9656292	1.00[CEU][hapmap];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017029	chr7:121958574-122338623	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121957400-122051200	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr7:121980800-122018600	Weak transcription	Left Ventricle	heart
3	chr7:121998200-122025600	Weak transcription	Fetal Lung	lung
4	chr7:122003200-122061000	Weak transcription	Aorta	Aorta
5	chr7:122003600-122012200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr7:122003600-122013200	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr7:122003800-122009600	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr7:122005400-122009600	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr7:122005800-122009600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr7:122005800-122012000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr7:122006200-122009600	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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