Variant report

Variant	rs1859351
Chromosome Location	chr7:122017812-122017813
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10216012	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10216014	1.00[CEU][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10229985	1.00[CEU][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap];0.83[EUR][1000 genomes]
rs10238734	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10241224	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10247924	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10252242	0.87[ASN][1000 genomes]
rs10277674	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10277721	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10277785	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10280017	0.87[ASN][1000 genomes]
rs10280555	1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10487223	1.00[CEU][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.92[TSI][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12532356	0.83[CEU][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs12538206	0.87[ASN][1000 genomes]
rs1443752	0.83[CEU][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs16870811	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17144227	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17144315	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17144328	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17144333	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17144341	1.00[CEU][hapmap];0.96[GIH][hapmap];0.92[TSI][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17364956	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs17365158	0.83[CEU][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs17365759	1.00[CEU][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17461878	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17462307	0.88[CEU][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs17462383	0.83[CEU][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs17462418	0.82[ASW][hapmap];0.83[CEU][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs17462508	0.82[CEU][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1859350	1.00[CEU][hapmap];0.96[GIH][hapmap];0.96[TSI][hapmap];0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1899691	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1899692	0.83[CEU][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs3807872	1.00[JPT][hapmap]
rs45489900	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59557479	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59563343	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62473063	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62473065	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62473069	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62476011	0.80[ASN][1000 genomes]
rs6944990	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs6945851	1.00[CEU][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6950106	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6963328	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6963586	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6967614	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6967924	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs873376	1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs873377	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs873378	1.00[CEU][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs886497	1.00[CEU][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9656292	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017029	chr7:121958574-122338623	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121957400-122051200	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr7:121980800-122018600	Weak transcription	Left Ventricle	heart
3	chr7:121998200-122025600	Weak transcription	Fetal Lung	lung
4	chr7:122003200-122061000	Weak transcription	Aorta	Aorta
5	chr7:122007400-122073000	Weak transcription	Lung	lung
6	chr7:122010400-122024000	Weak transcription	Ovary	ovary
7	chr7:122013600-122019000	Weak transcription	Pancreas	Pancrea
8	chr7:122013800-122081800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr7:122017400-122055200	Weak transcription	Liver	Liver
10	chr7:122017600-122019800	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr7:122017600-122020400	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr7:122017800-122018000	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr7:122017800-122018200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr7:122017800-122018600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr7:122017800-122019400	Enhancers	iPS-18 Cell Line	embryonic stem cell

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