Variant report

Variant	rs62476011
Chromosome Location	chr7:121954105-121954106
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr7:121949496-121954156	SK-N-MC	brain:	n/a	n/a
2	POLR2A	chr7:121952587-121956328	SK-N-MC	brain:	n/a	n/a

Variant related genes	Relation type
FEZF1	TF binding region

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10216012	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10216014	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10229985	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10238734	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10247924	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10252242	0.81[ASN][1000 genomes]
rs10277674	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10277721	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10277785	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10280017	0.81[ASN][1000 genomes]
rs10280555	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10487223	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12532356	0.93[ASN][1000 genomes]
rs12538206	0.81[ASN][1000 genomes]
rs1443752	0.93[ASN][1000 genomes]
rs16870811	0.87[ASN][1000 genomes]
rs17144227	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17144315	0.87[ASN][1000 genomes]
rs17144328	0.87[ASN][1000 genomes]
rs17144333	0.87[ASN][1000 genomes]
rs17364956	0.93[ASN][1000 genomes]
rs17365158	0.93[ASN][1000 genomes]
rs17461878	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17462307	0.93[ASN][1000 genomes]
rs17462383	0.93[ASN][1000 genomes]
rs17462418	0.93[ASN][1000 genomes]
rs17462508	0.93[ASN][1000 genomes]
rs1859351	0.80[ASN][1000 genomes]
rs1899691	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1899692	0.93[ASN][1000 genomes]
rs45489900	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs59557479	0.80[ASN][1000 genomes]
rs59563343	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62473063	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62473065	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62473067	0.86[ASN][1000 genomes]
rs62473069	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62476010	0.80[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs6944990	0.81[ASN][1000 genomes]
rs6945851	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6950106	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6963328	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6963586	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6967614	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6967924	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs873376	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs873377	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs873378	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs886497	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9656292	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5931	chr7:121944137-121988594	Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121952000-121955000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr7:121952000-121955600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr7:121952200-121955000	Weak transcription	Gastric	stomach
4	chr7:121952200-121955000	Weak transcription	Pancreas	Pancrea
5	chr7:121953200-121954600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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